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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTACATTCCTCGCCTCAGACTAGTAGTTTCACAGCTCCTGCAGTTAGAAGTGCTATACCAGATCCAGACGTCCGTCAAAGTTGTGCAAATTCATCAGAgtatgtaggctcatgtacagccccttatctaaattgatatttcttgtgaggtccttggagttcatttgtccattttctttcctttatttattgcttcctaaccttataaggtcttcgatatcaccacctggaagcaaacag

Basic information

species Zea mays
transcript GRMZM2G098815_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G098815_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os12g09610.1 (Oryza sativa), 5'ss of exon 5
GTGTACATTCCTCGCCTCAGACTAGTAGTTTCACAGCTCCTGCAGTTAGAAGTGCTATACCAGATCCAGACGTCCGTCAAAGTTGTGCAAATTCATCAGAgtatgtaggctcatgtacagccccttatctaaattgatatttcttgtgaggtccttggagttcatttgtccattttctttcctttatttattgcttcctaaccttataaggtcttcgatatcaccacctggaagcaaacag
||||||| ||   ||||||||| |||||||| |  ||     | |||||| |||||||||| |||||||| || | |||||| |||| |||||| ||||||||||||||||||  ||   || | |    |||||| ||| |  ||  ||    | |   |   ||| | | |  ||||  |||     |||| ||  |    |||| ||                               
GTGTACAGTCTCAGCCTCAGACCAGTAGTTTTAGTGCAGGAACTGTTAGATGTGCTATACCGGATCCAGATGTACCTCAAAGCTGTGTAAATTCGTCAGAgtatgtaggctcagctaactcctcctg---aaattgttatgtggtgctagaat-tcgtcatatttttcttcttggtcttctcttacaaaattggttttt---tttattag-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71449728|gb|DR830778.1|DR830778
EST:     AGTGCTATACCAGATCCAGACGTCCGTCAAAGTTGTGCAAATTCATCAGA                         AAATCTGCGTCTGATGATAGAGATACTACTATTTCTGTTTTACTCGAAGAC
genomic: AGTGCTATACCAGATCCAGACGTCCGTCAAAGTTGTGCAAATTCATCAGAgtatgtaggc ... aagcaaacagAAATCTGCGTCTGATGATAGAGATACTACTATTTCTGTTTTACTCGAAGAC