1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACCTGATAACAGAATCGGAAGGTTGGTCTCTGAATCTGTTGCTTCAATGCCGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatttttttggctcttgatggcagtgtaggatagccaccgtgctttttcttgctgatggattaacaataaccgaccccacag
species | Zea mays |
transcript | GRMZM2G098153_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|71439970|gb|DR821020.1|DR821020
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|67015095|gb|CO443844.1|CO443844
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|149112626|gb|EE295475.2|EE295475
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: GAAA-TGTCCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|71439969|gb|DR821019.1|DR821019
genomic: GAAATTGT-CCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|16919791|gb|BM074356.1|BM074356
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|37399477|gb|CF637068.1|CF637068
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|76286914|gb|DV026482.1|DV026482
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|15499459|gb|BI595972.1|BI595972
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|60358158|gb|DN225131.1|DN225131
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|93015003|gb|EB640523.1|EB640523
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|6526821|gb|AW216090.1|AW216090
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|19822328|gb|BQ048352.1|BQ048352
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|6057055|gb|AW091460.1|AW091460
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|78091175|gb|DV519549.1|DV519549
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|101382033|gb|EB813072.1|EB813072
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|93015004|gb|EB640524.1|EB640524
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGEST: gi|76284328|gb|DV023896.1|DV023896
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTG
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|83278726|gb|DV942734.1|DV942734
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAG GATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCEST: gi|67011620|gb|CO440369.1|CO440369
genomic: CGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
EST: GAAATTGTCCCCAGCTGCTTTCGATAAAGCTTT-CAATGACAAGATTCAG GATAACCTTGCGCTGGTTTACCTGTCAAGCATCACAAGGACACAAATCAGC
genomic: GAAATTGTCCCCAGCTGCTTTCGATAA-GCTTTTCAATGACAAGATTCAGgtaaattatt ... gaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTGATAACAGAATCGGAAGGTTGGTCTCTGAATCTGTTGCTTCAATGCCGAAATTGTCCCCAGCTGCTTTCGATAAGCTTTTCAATGACAAGATTCAGgtaaattatttttttggctcttgatggcagtgtaggatagccaccgtgctttttcttgctgatggattaacaataaccgaccccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT