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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTAGGTTCCTTTACCGGGGGATCTTTGGCAGATAAATTTGGGCGGACAAGAACATTCATCCTGGATGCAGCCCCACTGGCTGTAGGTGCATTCTTGAGgtgtgttttgaactatttagttgcaacttgtaagtatacactgttatcttatatgaaactgacagtctgacacaaatatctgtag

Basic information

species Zea mays
transcript GRMZM2G098011_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 5'ss of exon 5
CACTAGGTTCCTTTACCGGGGGATCTTTGGCAGATAAATTTGGGCGGACAAGAACATTCATCCTGGATGCAGCCCCACTGGCTGTAGGTGCATTCTTGAGgtgtgt-------tttgaactatttagttgcaacttgtaa-gtatac------------actgttatcttatatgaaactgacagtctgacaca---aatatctgtag
||  |||||| ||||| || ||  |||| || || |||||||| || ||| | || |||||||||||||||  ||| || ||||||||||||||| ||||||||||       || ||   |||  |||  |||| | || ||| ||            || | |||  |  ||  ||| || |  || |||||   || || || ||
CAGCAGGTTCTTTTACTGGAGGTGCTTTAGCTGACAAATTTGGACGAACACGGACGTTCATCCTGGATGCAATCCCTCTCGCTGTAGGTGCATTCCTGAGgtgtgtctatagattcgattaattgtgttttaactaggaatgtacacttgcttaagaaaaccgctattgt-catccaacgga-aacctaacacatgaaagatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211244569|gb|FL131418.1|FL131418
EST:     AGAACATTCATCCTGGATGCAGCCCCACTGGCTGTAGGTGCATTCTTGAG                         CGCAACAGCTCAAGATATCCGCACCATGATTATTGGTCGGTTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGCCCCACTGGCTGTAGGTGCATTCTTGAGgtgtgttttg ... atatctgtagCGCAACAGCTCAAGATATCCGCACCATGATTATTGGTCGGTTGCTTGCTGG
EST: gi|13198611|gb|BG354413.1|BG354413
EST:     AGAACATTCATCCTGGATGCAGCCCCACTGGCTGTAGGTGCATTCTTGAG                         CGCAACAGCTCTTTATATCCGCACCATGATTATTGGTCGGTTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGCCCCACTGGCTGTAGGTGCATTCTTGAGgtgtgttttg ... atatctgtagCGCAACAGCTCAAGATATCCGCACCATGATTATTGGTCGGTTGCTTGCTGG