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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAATAGGTCAGATGAAGATTTTTCACGGTATTGCTTCTCGATGGCATATATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAGgtaagcatattgagtacgccatagtgaaatttactcccaagtgatctcatatgcttatctaatttaattttctcctgatcag

Basic information

species Zea mays
transcript GRMZM2G097987_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097987_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g26080.1 (Oryza sativa), 5'ss of exon 7
CTAATAGGTCAGATGAAGATTTTTCACGGTATTGCTTCTCGATGGCATATATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAGgtaagcatattg-agtacgcca------tagtgaaatttactcccaagtgatctcatatgcttatctaatttaattttctcctgatcag----------
||||| |||||||||| ||||||||||| |||||||||||    ||||||||||| ||||||||||| ||||||||||||||| |||||||||| |||||| ||| |||     | ||  ||         ||||||| ||||   || ||||| ||||||||| ||| ||| |  ||    || ||            
CTAATCGGTCAGATGATGATTTTTCACGTTATTGCTTCTCATCCGCATATATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaataccatggcacatcaatcttccgctgaaattcactcttcagcgatcttatatgcttacctacttttaaatttaaatgttcttatatccgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16377662|gb|BI992043.1|BI992043
EST:     ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAG                         GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: gi|211150923|gb|FL213279.1|FL213279
EST:     ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAG                         GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: gi|13126561|gb|BG317131.1|BG317131
EST:     GGTGTATCACTGGATGATAAGAG                         GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
genomic: GGTGTATCACTGGATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: gi|13126560|gb|BG317130.1|BG317130
EST:     TGGATGATAAGAG                         GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
genomic: TGGATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: gi|211293764|gb|FL459861.1|FL459861
EST:     ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAG                         GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: gi|13126549|gb|BG317119.1|BG317119
EST:     ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAG                         GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: gi|16377683|gb|BI992052.1|BI992052
EST:     ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAG                         GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: gi|5819257|gb|AI987463.1|AI987463
EST:     GATGATAAGAG                         GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
genomic: GATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG