1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcatatgctcctaactcctaggcaatcttaatagcgtttctcatcattatattgcttctcttactgctggcacgctgtgtcttgtag
species | Zea mays |
transcript | GRMZM2G096962_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATEST: gi|211087730|gb|FL054352.1|FL054352
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAAT
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTTGAA-TCGGAGEST: gi|14645994|gb|BI180183.1|BI180183
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGT-GAAATCGGAG
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|211087722|gb|FL054344.1|FL054344
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|211518614|gb|FL054337.1|FL054337
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGEST: gi|32830089|gb|CD969767.1|CD969767
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGG
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|32860092|gb|CD999773.1|CD999773
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|33099864|gb|CF059824.1|CF059824
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|32829981|gb|CD969659.1|CD969659
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|32829709|gb|CD969387.1|CD969387
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|148974517|gb|EE025302.2|EE025302
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|211087721|gb|FL054343.1|FL054343
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|31355725|gb|CD440082.1|CD440082
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|16379884|gb|BI993198.1|BI993198
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|15208882|gb|BI430766.1|BI430766
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|149010029|gb|EE041834.2|EE041834
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|16926981|gb|BM080049.1|BM080049
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|83279377|gb|DV943385.1|DV943385
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|32858543|gb|CD998224.1|CD998224
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTEST: gi|148985808|gb|EE029766.2|EE029766
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCT
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|32848919|gb|CD988600.1|CD988600
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|13516046|gb|BG518322.1|BG518322
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGCGAAATCGGAGAEST: gi|32828996|gb|CD968674.1|CD968674
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|32829797|gb|CD969475.1|CD969475
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|16918822|gb|BM073911.1|BM073911
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|15053619|gb|BI359164.1|BI359164
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGGGAAATCGGAGAEST: gi|148967374|gb|EE018593.2|EE018593
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|32829763|gb|CD969441.1|CD969441
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|32849657|gb|CD989338.1|CD989338
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|13315933|gb|BG410281.1|BG410281
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGAEST: gi|211518615|gb|FL054338.1|FL054338
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
EST: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAG GGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
genomic: TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcat ... tgtcttgtagGGATGTCGACAAGAAGCTGGTGACGGTTCCAGAAATCCGTGAAATCGGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCACGGCACAGGATGTTGTTGACATAATAAAGTCACAACTTAATAGgcaagtgcatatgctcctaactcctaggcaatcttaatagcgtttctcatcattatattgcttctcttactgctggcacgctgtgtcttgtag
- - - - - AGGATG