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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACTTTTGTCCTGCCCTGGCCAAAGCTGTCAAAACCATGAAAAAGGCAGAGAAGGTGCTCCTTACAGTAAAGCCACAATGTGAGATTCCATTTCAAAgtttgattattcttctgtagttacatgtctattttctctgaattatgacacttatttgaacttcctcacttcaaatgcag

Basic information

species Zea mays
transcript GRMZM2G096585_T05
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096585_T05 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g41390.2 (Oryza sativa), 5'ss of exon 5
GCTACTTTTGTCCTGCCCTGGCCAAAGCTGTCAAAACCATGAAAAAGGCAGAGAAGGTGCTCCTTACAGTAAAGCCACAATGTGAGATTCCATTTCAAAgtttgattattcttctgtagttacatgtctattttctctgaattatgacacttatttgaa-cttcctcacttcaaatgcag
| | ||| || ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| || |||  |      |||| |    | |||  | |||     ||| ||   ||    | ||   |   |||| || |||  | |   ||       
GTTTCTTCTGCCCTGCGCTGGCGAAAGCTGTCAAAACCATGAAAAAAGCAGAGAAAGTGCTCCTTACAGTTAAGCCACAATgtaagcttcttt-----ggtttcacaccttttccatggttttccatctcttccttcgagttgattgaaaagatttaaaactttgtaatggcag------

upper sequence: GRMZM2G096585_T05 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G11240.1 (Glycine max), 5'ss of exon 4
GCTACTTTTGTCCTGCCCTGGCCAAAGCTGTCAAAACCATGAAAAAGGCAGAGAAGGTGCTCCTTACAGTAAAGCCACAATGTGAGATTCCATTTCAAAgtttgattattcttctgtagttacatgtctattttctctgaattatgacacttatttgaacttcctcacttcaaatgcag
| || || ||||||||  ||||||| ||||| ||||||||||| |||| |||||| || ||| | |  || ||||||||||||||| |   | |       |     |   || |||   |||| || |   || | | | ||   |     |||  || ||   ||            
GGTATTTCTGTCCTGCTTTGGCCAAGGCTGTGAAAACCATGAAGAAGGGAGAGAAAGTTCTCTTGAATGTGAAGCCACAATgtgag-taagactgttgttatcagcaacatttatgt--ctacacgttttgcttgtgtaagtt--tattgacattcaaagttttgcag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47962115|gb|CN844824.1|CN844824
EST:     AGAGAAGGTGCTCCTTACAGTAAAGCCACAATGTGAGATTCCATTTCAAG                         ATGGATTTGGTGAGAAGGGTAGACCAGCAGCTGGAGAGGAAGGTGCTGTGC
genomic: AGAGAAGGTGCTCCTTACAGTAAAGCCACAATGTGAGATTCCATTTCAAAgtttgattat ... tcaaatgcagATGGATTTGGTGAGAAGGGTAGACCAGCAGCTGGAGAGGAAGGTGCTGTGC