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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaatttttggatttgtatttgccatcgttgtttagtggttctgttgactcctgatctggtgcattttggatggtcag

Basic information

species Zea mays
transcript GRMZM2G095969_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095969_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g06440.1 (Oryza sativa), 5'ss of exon 5
GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctg-gaatttttggatttgtatttgccatcgttgtttagtggttctgttgactcctgatctggtgcattttggatggtcag------------------
|||| ||||||||||| ||||| |||||||| || |||||||||||||  | | ||| |      |   | |  ||| | || |   ||    ||  |  | |   |   |      |    |  | ||                  
GGAGGCTGTTCTGCACGGTGGGCGTGCACCCGACGAGATGCGGGgtaggggtggattgtgttccattcctctttcattgctggtacctgagattggcgggtgccttttgcgattgggtcatgtaattagtgctttgctgaatgttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211487334|gb|FL145767.1|FL145767
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|101392457|gb|EB818158.1|EB818158
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|88757501|gb|DY541642.1|DY541642
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|76936926|gb|DV174965.1|DV174965
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211481566|gb|FL145739.1|FL145739
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211481567|gb|FL145740.1|FL145740
EST:     GGAGACTSTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGA
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGA
EST: gi|211484447|gb|FL145748.1|FL145748
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211487326|gb|FL145759.1|FL145759
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211487336|gb|FL145769.1|FL145769
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211487327|gb|FL145760.1|FL145760
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|94477631|gb|EB706589.1|EB706589
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211484455|gb|FL145756.1|FL145756
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211484456|gb|FL145757.1|FL145757
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211487328|gb|FL145761.1|FL145761
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|71774366|gb|DR972244.1|DR972244
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|76021692|gb|DT948862.1|DT948862
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|74242558|gb|DT650472.1|DT650472
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211481564|gb|FL145737.1|FL145737
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGAYCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|71434563|gb|DR815613.1|DR815613
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211487335|gb|FL145768.1|FL145768
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211484453|gb|FL145754.1|FL145754
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211481559|gb|FL145732.1|FL145732
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211484445|gb|FL145746.1|FL145746
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGSACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|89251475|gb|DY623261.1|DY623261
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211481563|gb|FL145736.1|FL145736
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGT                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211484450|gb|FL145751.1|FL145751
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211481568|gb|FL145741.1|FL145741
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGT
EST: gi|78108903|gb|DV527320.1|DV527320
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|37421738|gb|CF648570.1|CF648570
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211484449|gb|FL145750.1|FL145750
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211487330|gb|FL145763.1|FL145763
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|37419762|gb|CF647566.1|CF647566
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGG
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGG
EST: gi|211481565|gb|FL145738.1|FL145738
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211481570|gb|FL145743.1|FL145743
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211481560|gb|FL145733.1|FL145733
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCC
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|71325561|gb|DR799471.1|DR799471
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG                         GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211481561|gb|FL145734.1|FL145734
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211487331|gb|FL145764.1|FL145764
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|211484443|gb|FL145744.1|FL145744
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: gi|14548489|gb|BI096833.1|BI096833
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTG
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTG
EST: gi|87157799|gb|DY402588.1|DY402588
EST:     GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG                         GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCT
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaatttttggatttgtatttgccatcgttgtttagtggttctgttgactcctgatctggtgcattttggatggtcag

- - - - - - - - - - - - - - - - - AAGATG