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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCGgtaatgcatttagctttctaatcaggcttagtggtgtagatttaatgcttgataaatactaatttgatatttctactttgagcag

Basic information

species Zea mays
transcript GRMZM2G095757_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 5
ACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCGgtaatgcatttagctttctaatcaggcttagtggtgtagattta-atgcttg-ataaatactaatttgatattt---ctactttgagcag
|| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |||||  || |  ||  |   |||  ||| ||| |||  || ||| | |||||  ||  |||| |||   |  ||||||||||
ACCCGTGATGATGCTAGGCAATTTATGAAGTATCTTCACCCTGATCTTGGTGTTGgtaatgaatttaatttccatatatgatctagcagtgcagagttatgtgattggaaaaataaaaacctgatttttacccacctttgagcag

upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 6
ACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCGgtaatgcatttag---ctttctaatcaggctt-agtggtgtagatttaatgcttgataaatactaatttgatatttctactttgagcag--------------------------------------------------------------------------
|  |||||||||||| | || || ||||||| |||||||||||||||||| || |||||| || |  |   |||| | || ||   | | | |  |||| |||||  |   ||  ||  |   |  |||||    |||||  |                                                                           
AAGCGTGATGATGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGCGTTGgtaattcaatccgattcttttttattagctctgaattggttagaattaat--tgattatgtatcagcgttgtatttgagatttgaaaacatttttggttagtcaaggataaagctgttttcttcagtttaaaaatatgtaatttctatgtttgatcttggcag

upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 8
ACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCGgtaatgcatttag---ctttctaatcaggcttag--tgg-tgtagatttaat-gcttgataa-atactaatttgatatttctactttgagcag---------------------------------
|  |||||||| ||| | || || ||||||| ||||||||||||||||||||| |||||| || |  |   |||| | || ||  ||    ||| || | ||  |||   ||||| |  ||      |  |||||    |||||  |                                  
AAGCGTGATGACGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGTGTTGgtaattcaatctgattcttttttattagctttgaattggctggaaatggaattaattgattatgtatctgcattgtatttgagatttgaaaacatttttggtaattactatgtttgatcttggcag

upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 6
ACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCGgtaatgcatttagctttctaatcaggcttagtggtgtagatttaatgcttgataaatactaatttgatatttctactttga-gcag---------------------------------------------------------------------------------------------
|  |||||||||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||||||    ||     ||  ||      | |  |  |  | ||||| |   | || |||| | |   | || | | |||                                                                                              
AAACGTGATGATGCTCGGCAATTCATGAAGTTTCTCCATCCTGATCTTGGTGTTGgtaatgcatttgaacttt--gccaaactctcccctctgaacat--tacttgacatggattagtttgttttgctttctgtaatgcaccttctcttttgtatttgctgagacagattagcttattgactgcatattcaagatctgtctagatcgtttttaactatttgtatgacttaacag

upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 5
lower sequence: PP1S159_14V6.1 (Physcomitrella patens), 5'ss of exon 5
ACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCGgtaatg-----catttagct---ttctaatcaggcttagtggtgtagatttaatgcttgataaatactaatttgatatttctac-----tttgagcag--
| ||||||||||||| |||||||  |||||||| | ||||| |||||||| ||| |||| |     || | | ||   || |  |||    |       |  ||||||     |  |  |   | |   || | || |      ||| |   |  
AATCGTGATGATGCTCGGCAATTTTTGAAGTATTTGCATCCGGATCTTGGCGTCCgtaaggaacaacactcacctaaattattttcatatcttaatcaatgcatttaagttccggaaggttgcactactatgtctccatgagtgttttatgggag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211278210|gb|FL461478.1|FL461478
EST:     TGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCG                         AATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATC
genomic: TGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCGgtaatgcatt ... ctttgagcagAATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATC