1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTATGCGGCGCACTACATTGTGATCTGATGATGCAGTTCAAAAAACCAAAAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAGgttcttatcattttttttgtatctgatataaatttgtttggttggttgggtttctgctattctggtagcgtgcaagataccaatccttttctgataactt...
species | Zea mays |
transcript | GRMZM2G095323_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: NNNGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAG AGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTEST: gi|71330742|gb|DR802158.1|DR802158
genomic: AAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAGgttcttatca ... tttacgacagAGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGT
EST: NNNGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAG AGCCTTGCAGACAGTTGCTTTCCTATTAATNCA-GGTCTTGCTGCCAGCCGEST: gi|148956175|gb|EC901959.2|EC901959
genomic: AAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAGgttcttatca ... tttacgacagAGCCTTGCAGACAGTTGCTTTCCTATTAAT-CAAGGTCTTGCTGCCAGCCG
EST: NNNGTAAATGCAATGCAGCTGCAGCTACCAGGAATCGTCATCTTTGTGAG AGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCEST: gi|76293362|gb|DV032930.1|DV032930
genomic: AAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAGgttcttatca ... tttacgacagAGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCC
EST: NNNGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAG AGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTEST: gi|78116974|gb|DV535361.1|DV535361
genomic: AAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAGgttcttatca ... tttacgacagAGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGT
EST: NNNGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAG AGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTEST: gi|71770155|gb|DR968092.1|DR968092
genomic: AAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAGgttcttatca ... tttacgacagAGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGT
EST: NNNGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAG AGCCTTGCAGACAGTTGCTTTCCTATTAAEST: gi|71428072|gb|DR809122.1|DR809122
genomic: AAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAGgttcttatca ... tttacgacagAGCCTTGCAGACAGTTGCTTTCCTATTAA
EST: NNNGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAG AGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTEST: gi|71439253|gb|DR820303.1|DR820303
genomic: AAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAGgttcttatca ... tttacgacagAGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGT
EST: NNNGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAG AGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTEST: gi|71310796|gb|DR791700.1|DR791700
genomic: AAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAGgttcttatca ... tttacgacagAGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGT
EST: NNNGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAG AGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTEST: gi|71773093|gb|DR971011.1|DR971011
genomic: AAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAGgttcttatca ... tttacgacagAGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGT
EST: NNNGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAG AGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTEST: gi|78115630|gb|DV534018.1|DV534018
genomic: AAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAGgttcttatca ... tttacgacagAGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGT
EST: AA-GTAAATGCAATGCAGCTGCAGCTACCAGGAATCGTCATCTTTGTGAG AGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGT
genomic: AAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAGgttcttatca ... tttacgacagAGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTATGCGGCGCACTACATTGTGATCTGATGATGCAGTTCAAAAAACCAAAAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTGTGAGgttcttatcattttttttgtatctgatataaatttgtttggttggttgggtttctgctattctggtagcgtgcaagataccaatccttttctgataactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA