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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGATAATATTATAATGGAGGCTATAAAGAACTTAAATGAGCCTACGGGATCACACAGAACTACTATTGCTAATTACATAGAGgtatgcatctgtcttttgttcctttccagtactagatctgtgtttctagtggtatgccctacaaatgaacattccaatgttgtctttttagggtaatgtc...

Basic information

species Zea mays
transcript GRMZM2G095239_T03
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211130407|gb|FL313028.1|FL313028
EST:     TAAATGAGCCTACGGGATCACACAGAACTACTATTGCTAATTACATAGAG                         GAGCAATATTGGCCACCTAGTGATTTTGATCACTTACTATCTGCAAAACTG
genomic: TAAATGAGCCTACGGGATCACACAGAACTACTATTGCTAATTACATAGAGgtatgcatct ... gtttgcttagGAGCAATATTGGCCACCTAGTGATTTTGATCACTTACTATCTGCAAAACTG
EST: gi|60397176|gb|DN229992.1|DN229992
EST:     TAAATGAGCCTACGGGATCACACAGAACTACTATTGCTAATTACATAGAG                         GAGCAATATTGGCCACCTAGTGATTTTGATCACTTACTATCTGCAAAACTG
genomic: TAAATGAGCCTACGGGATCACACAGAACTACTATTGCTAATTACATAGAGgtatgcatct ... gtttgcttagGAGCAATATTGGCCACCTAGTGATTTTGATCACTTACTATCTGCAAAACTG
EST: gi|74244193|gb|DT652107.1|DT652107
EST:     TAAATGAGCCTACGGGATCACACAGAACTACTATTGCTAATTACATAGAG                         GAGCAATATTGGCCAACTAGTGATTTTGA
genomic: TAAATGAGCCTACGGGATCACACAGAACTACTATTGCTAATTACATAGAGgtatgcatct ... gtttgcttagGAGCAATATTGGCCACCTAGTGATTTTGA
EST: gi|60359172|gb|DN226145.1|DN226145
EST:     TAAATGAGCCTACGGGATCACACAGAACTACTATTGCTAATTACATAGAG                         GAGCAATATTGGCCACCTAGTGATTTTGATCACTTACTATCTGCAAAACTG
genomic: TAAATGAGCCTACGGGATCACACAGAACTACTATTGCTAATTACATAGAGgtatgcatct ... gtttgcttagGAGCAATATTGGCCACCTAGTGATTTTGATCACTTACTATCTGCAAAACTG