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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGCCGACGCAGAGGAGGTGCTGAAGGGTATAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGAgtgagatctactccgccaccgttttcctttttcctctaagaaacctacgtgtattctgctactactagtagagtcgagaagaaggtgtgggtacggtctgtgcatgatgaatcatgagtcgagcgcttttccag

Basic information

species Zea mays
transcript GRMZM2G095141_T02
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71301051|gb|DR786555.1|DR786555
EST:     TAAAGCAGGAGCCAGGCGTGCGGTACTCGGTGCTAACACCTAACCTCAGA                         GGGTTCGAGGCTGCCATCGCAGCCGGCGCGAAGGAAATCGCGGTCTTCGCG
genomic: TAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGAgtgagatcta ... gcttttccagGGGTTCGAGGCTGCCATCGCAGCCGGCGCGAAGGAAATCGCGGTCTTCGCG
EST: gi|78075611|gb|DV504045.1|DV504045
EST:     AAAGCAGGAGCCAGGCGTGCGGTACCCGGTGGCTA-CACCTAACCTCAGA                         GGGGTCGAGGCTGCCATCGCAGC
genomic: AAAGCAGGAGCCAGGCGTGCGGTACCCGGTG-CTAACACCTAACCTCAGAgtgagatcta ... gcttttccagGGGTTCGAGGCTGCCATCGCAGC
EST: gi|149100624|gb|EE186712.2|EE186712
EST:     TAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGA                         GGGTTCGAGGCTGCCATCGCAGCCGGCGCGAAAGGAA-TCGCGGTCTTCGC
genomic: TAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGAgtgagatcta ... gcttttccagGGGTTCGAGGCTGCCATCGCAGCCGGCGCGAA-GGAAATCGCGGTCTTCGC
EST: gi|71447021|gb|DR828071.1|DR828071
EST:     TAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGA                         GGGTTCGAGGCTGCCATCGCAGCCGGC
genomic: TAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGAgtgagatcta ... gcttttccagGGGTTCGAGGCTGCCATCGCAGCCGGC
EST: gi|148951347|gb|EC897061.2|EC897061
EST:     TAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGA                         GGGTTCGAGGCTGCCATCGCAGCCGGCGCGAAGGAAATCGCGGTCTTCGCG
genomic: TAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGAgtgagatcta ... gcttttccagGGGTTCGAGGCTGCCATCGCAGCCGGCGCGAAGGAAATCGCGGTCTTCGCG
EST: gi|91872713|gb|EB402670.1|EB402670
EST:     TAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGA                         GGGTTCGAGGCTGCCATCGCAGCCGGCGCGAAGGAAATCGCGGTCTTCGCG
genomic: TAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGAgtgagatcta ... gcttttccagGGGTTCGAGGCTGCCATCGCAGCCGGCGCGAAGGAAATCGCGGTCTTCGCG
EST: gi|148951196|gb|EC896884.2|EC896884
EST:     TAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGA                         GGGTTCGAGGCTGCCATCGCAGCCGGCGCGAAGGAAATCGCGGTCTTCGCG
genomic: TAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGAgtgagatcta ... gcttttccagGGGTTCGAGGCTGCCATCGCAGCCGGCGCGAAGGAAATCGCGGTCTTCGCG
EST: gi|149076596|gb|EE165231.2|EE165231
EST:     TAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGA                         GGGTTCGAGGCTGCCATCGCAGCCGGCGCGAAGGAAATCGCGGTCTTCGCG
genomic: TAAAGCAGGAGCCAGGCGTGCGGTACCCGGTGCTAACACCTAACCTCAGAgtgagatcta ... gcttttccagGGGTTCGAGGCTGCCATCGCAGCCGGCGCGAAGGAAATCGCGGTCTTCGCG