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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtggttaacaacactttggcagcatcatttttacatgtttgttctgttcattaacagcgcagtatatgaattcaaactaagacattatcagtg...

Basic information

species Zea mays
transcript GRMZM2G095114_T01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50324422|gb|CO519548.1|CO519548
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211192048|gb|FL055486.1|FL055486
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCCGGTCAG                         ATAGGAAGCCA
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCC-GGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCA
EST: gi|211194451|gb|FL055502.1|FL055502
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGC-ACCAG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAG
EST: gi|18165654|gb|BM335493.1|BM335493
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211194439|gb|FL055490.1|FL055490
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACG
EST: gi|211196844|gb|FL055505.1|FL055505
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCA
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCA
EST: gi|211196843|gb|FL055504.1|FL055504
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTG
EST: gi|5468861|gb|AI834652.1|AI834652
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211196851|gb|FL055512.1|FL055512
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAKATGAATGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|60356830|gb|DN223803.1|DN223803
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211196849|gb|FL055510.1|FL055510
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|60397418|gb|DN230234.1|DN230234
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|12969696|gb|BG266611.1|BG266611
EST:     AGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: AGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211288302|gb|FL055521.1|FL055521
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGCTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|60356922|gb|DN223895.1|DN223895
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|5566778|gb|AI881644.1|AI881644
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211194450|gb|FL055501.1|FL055501
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTT
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTT
EST: gi|78023597|gb|DV491984.1|DV491984
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|9254191|gb|BE344659.1|BE344659
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCCCCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211194445|gb|FL055496.1|FL055496
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGWAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211192050|gb|FL055488.1|FL055488
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCA
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCA
EST: gi|13558630|gb|BG549986.1|BG549986
EST:     GTGATTGACAAGGTTCACGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAG
EST: gi|50324421|gb|CO519547.1|CO519547
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|9254192|gb|BE344660.1|BE344660
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|13558629|gb|BG549985.1|BG549985
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|13558270|gb|BG549626.1|BG549626
EST:     TGATGAGGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: TGATGAGGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|76012388|gb|DT939558.1|DT939558
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|19350796|gb|BM895328.1|BM895328
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|60337877|gb|DN204850.1|DN204850
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|18180735|gb|BM381945.1|BM381945
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGC
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGC
EST: gi|211194452|gb|FL055503.1|FL055503
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGWAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211194446|gb|FL055497.1|FL055497
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211196847|gb|FL055508.1|FL055508
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211194441|gb|FL055492.1|FL055492
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAA
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAA
EST: gi|84980176|gb|DW530525.1|DW530525
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211196856|gb|FL055517.1|FL055517
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211196848|gb|FL055509.1|FL055509
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|17929737|gb|BM266649.1|BM266649
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211288300|gb|FL055519.1|FL055519
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAA
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAA
EST: gi|211196855|gb|FL055516.1|FL055516
EST:     GTGATTGACAAGGTYCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGT
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGT
EST: gi|211196852|gb|FL055513.1|FL055513
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|16927222|gb|BM080291.1|BM080291
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|4804030|gb|AI665896.1|AI665896
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211196845|gb|FL055506.1|FL055506
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGGAAGCCACCAGGTGTTGGGCCGCGGAAGAAGGAAG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGG-AAGCCACCAGGTGTTGG-CCGCGGAAGA-GGAAG
EST: gi|211288306|gb|FL055525.1|FL055525
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211286858|gb|FL439209.1|FL439209
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGSCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211192047|gb|FL055485.1|FL055485
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGATAGAKGAAGGGGGGACGTTGGT
genomic: GTGATTGACAAGGTTCAGGAGGAAACTT-CCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGA-AGAGGAAGGGGGGACGTTGGT
EST: gi|18176139|gb|BM351201.1|BM351201
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGAACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|211194443|gb|FL055494.1|FL055494
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
EST: gi|71313635|gb|DR793393.1|DR793393
EST:     GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG                         ATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 43 (upstream exon), 49 (downstream exon)
Score: 192

GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTGCTAAACCTGGAGGCAGAGGCATCGGACGTGGCCAAGATGATGGAGGTAG


Block sizes: 43 (upstream exon), 49 (downstream exon)
Score: 144

GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTGCTAAACCTGGAGGCAGAGGCATCGGACGTGGCCAAGATGATGGAGGTAG


Block sizes: 43 (upstream exon), 49 (downstream exon)
Score: 166

GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTGCTAAACCTGGAGGCAGAGGCATCGGACGTGGCCAAGATGATGGAGGTAG


Block sizes: 43 (upstream exon), 49 (downstream exon)
Score: 123

GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtg ... atcaatgcagATAGGAAGCCACCAGGTGTTGGCCGCGGAAGAGGAAGGGGGGACGTTGGTGCTAAACCTGGAGGCAGAGGCATCGGACGTGGCCAAGATGATGGAGGTAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGgtatggagtggttaacaacactttggcagcatcatttttacatgtttgttctgttcattaacagcgcagtatatgaattcaaactaagacattatcagtg

- - - - - - - -  GGAGGA