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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCCTACTGGAGTAGATCCTACCATCGAACAGTGGGAACAGATTAGGCAGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagatgtgcagagcaaaagtgacttgacattgcaaaaaacacatctggatcctatacactcatcattcacatttttttgttaacctgacag

Basic information

species Zea mays
transcript GRMZM2G094712_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094712_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g55540.1 (Oryza sativa), 5'ss of exon 7
CAACCCTACTGGAGTAGATCCTACCATCGAACAGTGGGAACAGATTAGGCAGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgta---tgcagatgtgcagagcaaaagtgacttgacattgcaaaaaacacatctggatcctatacactcatcattcacatttttttg-ttaac-ctgacag-
|||||||||||||||||| || ||  | || |||||||||||||| |||||| |||||||||||||| || |||| || |||||||| || || ||||| |||   |   |   | |  |  |    |   |  |  |   |  || ||   |    |  |  | ||| ||  |||   || || |  ||||  || | |  
CAACCCTACTGGAGTAGACCCAACTTTGGACCAGTGGGAACAGATCAGGCAGTTGATGAGATCAAAAGCATTGCTGCCATTCTTTGATAGCGCTTATCAGgtaaattattggcatccttaatacttatacttctagttcttaggaagcatgac--attggttaatacttatacttctagttcttatacttaatacttatact

upper sequence: GRMZM2G094712_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA06G08670.2 (Glycine max), 5'ss of exon 7
CAACCCTACTGGAGTAGATCCTACCATCGAACAGTGGGAACAGATTAGGCAGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagatgtgcagagcaaaagtgacttgacattgcaaaaaacacatctggatcctatacactcatcattcacatttttttgttaacctgacag------
 ||||| ||||| || ||||| ||| | || || ||||| |||||||||||||| || ||||||||| |  || | || |||||||||||||| ||||| ||| ||     |   |     || | ||||     | |  |  |    |     |  | |     ||| |     |    |  ||  || ||| |       
TAACCCCACTGGTGTGGATCCAACCCTTGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGgtaagccccc-ttttgcttgcaactaacttcttgcttctcaccat-tgtgaaatttgtgtgtgtgcattaaaattacaaatccgtccacttgaaatctcttg

upper sequence: GRMZM2G094712_T04 (Zea mays), 5'ss of exon 5
lower sequence: AT5G19550.1 (Arabidopsis thaliana), 5'ss of exon 7
CAACCCTACTGGAGTAGATCCTACCATCGAACAGTGGGAACAGATTAGGCAGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagatgtgcagagcaaaagtgacttgacattgcaaaaaacacatctggatcctatacactcatcattcacatttttttgttaacctgacag------------------------------------------------------
||| || |||||||| || || |||   |||||||||||||||||| | |||||||||||||| |||    |  | || || ||||| ||||| ||||| |||     |     | || ||   |  |||    ||||   |  ||    |||    || | ||  || |  | | || |  |||   | |||                                                         
CAATCCCACTGGAGTTGACCCAACCTCTGAACAGTGGGAACAGATTCGACAGCTGATGAGATCTAAAAGCTTATTACCCTTTTTTGATAGTGCATATCAGgta---gcactcataaaggaagtcttgctt--tgttgctttattcaatggtgg--tttacaaacaaatgaaccccgttatagtgtatgcttgaatcttatctaatgtagaaaaatagcagcctgactcatttttcctaacacttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32927108|gb|CF031920.1|CF031920
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|67021032|gb|CO449781.1|CO449781
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAAGTCTTGACAAAGATGCTCANTCANTGCGTATGTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAA-GTCTTGACAAAGATGCTCAGTCAGTGCGTATGTT
EST: gi|32846387|gb|CD986068.1|CD986068
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32927251|gb|CF032063.1|CF032063
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32847897|gb|CD987578.1|CD987578
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32927820|gb|CF032632.1|CF032632
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32933760|gb|CF038572.1|CF038572
EST:     AGCTGATGAGATCTACATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32930089|gb|CF034901.1|CF034901
EST:     AGCTGATGAGATCANAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGC-TTGNCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTG-CAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTT
EST: gi|32799409|gb|CD951645.1|CD951645
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32927942|gb|CF032754.1|CF032754
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32804106|gb|CD956342.1|CD956342
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32927133|gb|CF031945.1|CF031945
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32927818|gb|CF032630.1|CF032630
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32804249|gb|CD956485.1|CD956485
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32933150|gb|CF037962.1|CF037962
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32927166|gb|CF031978.1|CF031978
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32839101|gb|CD978782.1|CD978782
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|31356146|gb|CD440503.1|CD440503
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGC-TTGCAAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGC-AAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTT
EST: gi|32866948|gb|CF006630.1|CF006630
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32927936|gb|CF032748.1|CF032748
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|67039034|gb|CO465289.1|CO465289
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|67016151|gb|CO444900.1|CO444900
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|67024830|gb|CO453579.1|CO453579
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|38502478|gb|CF972338.1|CF972338
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32804293|gb|CD956529.1|CD956529
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|31352660|gb|CD437017.1|CD437017
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32927863|gb|CF032675.1|CF032675
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32803562|gb|CD955798.1|CD955798
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32927781|gb|CF032593.1|CF032593
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32927877|gb|CF032689.1|CF032689
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32799014|gb|CD951250.1|CD951250
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32848067|gb|CD987748.1|CD987748
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|67030857|gb|CO459606.1|CO459606
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32927823|gb|CF032635.1|CF032635
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32927046|gb|CF031858.1|CF031858
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|88758523|gb|DY542892.1|DY542892
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32927962|gb|CF032774.1|CF032774
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|67016138|gb|CO444887.1|CO444887
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|74052515|gb|DN591123.1|DN591123
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32826589|gb|CD966267.1|CD966267
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32827202|gb|CD966880.1|CD966880
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32927701|gb|CF032513.1|CF032513
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
EST: gi|32927842|gb|CF032654.1|CF032654
EST:     AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAA                         GGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT
genomic: AGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 218

CAACCCTACTGGAGTAGATCCTACCATCGAACAGTGGGAACAGATTAGGCAGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTTGTTGCTGATGGTGGTGAACTTCTCATGGCTCAGAGCTACGCTAAGAACA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 457

CAACCCTACTGGAGTAGATCCTACCATCGAACAGTGGGAACAGATTAGGCAGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTTGTTGCTGATGGTGGTGAACTTCTCATGGCTCAGAGCTACGCTAAGAACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 461

CAACCCTACTGGAGTAGATCCTACCATCGAACAGTGGGAACAGATTAGGCAGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTTGTTGCTGATGGTGGTGAACTTCTCATGGCTCAGAGCTACGCTAAGAACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 450

CAACCCTACTGGAGTAGATCCTACCATCGAACAGTGGGAACAGATTAGGCAGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagat ... aacctgacagGGCTTTGCAAGTGGAAGTCTTGACAAAGATGCTCAGTCAGTGCGTATGTTTGTTGCTGATGGTGGTGAACTTCTCATGGCTCAGAGCTACGCTAAGAACA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACCCTACTGGAGTAGATCCTACCATCGAACAGTGGGAACAGATTAGGCAGCTGATGAGATCAAAATCACTGCTTCCGTTCTTTGACAGTGCCTATCAAgtatgcagatgtgcagagcaaaagtgacttgacattgcaaaaaacacatctggatcctatacactcatcattcacatttttttgttaacctgacag

- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA