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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTGCTATTCAGGAGAATAGGGTTGCTACCGTGCAGTGCCTATCGGGTACTGGTTCTTTAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAGgttaaacttttcttgctcctatctgttttgctgcttcctgattataatgcatgactgctaaatcatacaaatatattccag

Basic information

species Zea mays
transcript GRMZM2G094712_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094712_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g55540.1 (Oryza sativa), 5'ss of exon 5
CCCTGCTATTCAGGAGAATAGGGTTGCTACCGTGCAGTGCCTATCGGGTACTGGTTCTTTAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAGgtta--aacttttcttg-ctcct--atctgttttgc--tgcttcctgattataatgc-----atgactgctaaatcatacaaatatattccag
 ||||| ||||| ||||||||||| ||||| || |||||| | || || |||||||||||||| || ||||||||||||||||||||||| ||||| || || |  ||  |  |||| |||||  ||   |  ||   || |||   |||| |||||     ||||  ||||||| ||| |  | |  |||||
TCCTGCCATTCAAGAGAATAGGGTGGCTACAGTTCAGTGCTTGTCAGGAACTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatctgccttggctccttcatagatactgatatggttctacattacaatgcaaagtatgatcgctaaattataaacgtgttctccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32824566|gb|CD964288.1|CD964288
EST:     TAAGCGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAG                         CGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC
genomic: TAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAGgttaaacttt ... tatattccagCGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC
EST: gi|32823808|gb|CD963530.1|CD963530
EST:     TAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAG                         CGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC
genomic: TAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAGgttaaacttt ... tatattccagCGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC
EST: gi|67031870|gb|CO460619.1|CO460619
EST:     CTGGTTCTTTAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAG                         CGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC
genomic: CTGGTTCTTTAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAGgttaaacttt ... tatattccagCGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC
EST: gi|213188579|gb|FM192962.1|FM192962
EST:     CTGGTTCTTTAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAG                         CGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC
genomic: CTGGTTCTTTAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAGgttaaacttt ... tatattccagCGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC
EST: gi|32825504|gb|CD965226.1|CD965226
EST:     TAAGGGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAG                         CGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC
genomic: TAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAGgttaaacttt ... tatattccagCGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC
EST: gi|32791023|gb|CD943259.1|CD943259
EST:     TAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAG                         CGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC
genomic: TAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAGgttaaacttt ... tatattccagCGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC
EST: gi|32848381|gb|CD988062.1|CD988062
EST:     CTGGTTCTTTAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAG                         CGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC
genomic: CTGGTTCTTTAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAGgttaaacttt ... tatattccagCGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC
EST: gi|32823509|gb|CD963231.1|CD963231
EST:     TAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAG                         CGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC
genomic: TAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAGgttaaacttt ... tatattccagCGCACTATCTACATCCCACAACCAACCTGGGGAAATCACCCAAAAGTCTTC