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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTGTCTGGTCGCCCTCATTTAAGCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtgaaatttgcaaaccttttgtcatctgtatcaacatatgttaggttgatattttctttatgtttaaacaaaagaaacaacatccttgatagc...

Basic information

species Zea mays
transcript GRMZM2G094255_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094255_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g52710.1 (Oryza sativa), 5'ss of exon 5
GATCTGTCTGGTCGCCCTCATTTAAGCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtgaaatt-tgcaaaccttttgtcatctgtatcaacatatgttaggttgata--ttttctttatgtttaaacaaaagaaacaacatccttgatagc
||||| |||||||| |||||||| || || ||||||  |||||| ||| | |||||||||||||| ||||| ||||||| |  ||||||| || |    || |    | | | |    | |  ||  | || |   ||||| | |||    | | ||     |   |||||| ||   
GATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACTGAGAGAGTTGGCACATACGATACTCAGgtaattcctgaaattatgtagctattatcctttttttttgggaaaaacttgtgatggtttcttttcgtcatgccagatccaatatggct-tatccttaatc--

upper sequence: GRMZM2G094255_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g52710.3 (Oryza sativa), 5'ss of exon 5
GATCTGTCTGGTCGCCCTCATTTAAGCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtgaaatttgcaaaccttttgtcatctgtatcaacatatgttaggttgatattttctttatgtttaaacaaaagaaacaacatccttgatagc
||||| |||||||| |||||||| || || ||||||  |||||| ||| | |||||||||||||| ||||| ||||||| |  |||||||    | |  ||   | | | | |    | |   | |  ||||  |||||||  ||     ||                       
GATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACTGAGAGAGTTGGCACATACGATACTCAGgtaattcctgaaattatgtagctattatcctttttttttgggaaaaacttg--tgatggtttcttttcgtcatgccag----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76010862|gb|DT938032.1|DT938032
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|12970168|gb|BG266848.1|BG266848
EST:     CTCAAAGAGTTGGCACATACGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: CTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|31355338|gb|CD439695.1|CD439695
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|76284483|gb|DV024051.1|DV024051
EST:     CAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: CAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|50323498|gb|CO518624.1|CO518624
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|94478728|gb|EB707686.1|EB707686
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|76293135|gb|DV032703.1|DV032703
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|71327961|gb|DR800622.1|DR800622
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATACGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|60349510|gb|DN216483.1|DN216483
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|78107718|gb|DV526136.1|DV526136
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|78112492|gb|DV530886.1|DV530886
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGGGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|76289085|gb|DV028653.1|DV028653
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|74232835|gb|DT640749.1|DT640749
EST:     CTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: CTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|76010863|gb|DT938033.1|DT938033
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|76284484|gb|DV024052.1|DV024052
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|78086465|gb|DV514858.1|DV514858
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|74232836|gb|DT640750.1|DT640750
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|31664107|gb|CD573287.1|CD573287
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
EST: gi|78107717|gb|DV526135.1|DV526135
EST:     GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAG                         CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT
genomic: GCTGTGGCTTAGATATTCCTACTCAAAGAGTTGGCACATATGATACACAGgtaaattgtg ... ttggtcccagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTT