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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACAGAAAAGTTTCATTTATTCGTTTTGGTCCCAGCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTTCACATCCGTCAGgtacatattgctgtccgctcaaatcaaattctcctcaaaacagctggatcagtgatacaattttagtcacgggcattttgtagaatcatattgactggctgagcataaggccaagatggttgagttttctctattttttatagcgaatttgcatgaccccgtccctatcacctgatctcgctccatactgtcttttgaag

Basic information

species Zea mays
transcript GRMZM2G094255_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094255_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g52710.3 (Oryza sativa), 5'ss of exon 6
CTTACAGAAAAGTTTCATTTATTCGTTTTGGTC-CCAGCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTTCACATCCGTCAGgtacatattgctgtccgctcaaatcaaattctcctcaaaacagctggatcagtgatacaattttagtcacgggcattttgtagaatcatattgactggctgagcataaggccaagatggttgagttttctctattttttatagcgaatttgcatgaccccgtccctatcacctgatctcgctccatactg--tcttttgaag
|||| | |    ||  ||||||||  |||| |  |||||| ||||||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||| | |  ||| ||||||||  | || |    | ||||||| |  |||||   |  |    |||| |   || |||   ||   || | ||| ||||||    | ||  |||  ||| ||| | ||     |||||  |   | |    |||   |   |||||| |  ||    |  |   |||| |||||
CTTAGACAGCTATTG-ATTTATTCACTTTGATGACCAGCTAGTTGAGCACTTTTTCCAATCTCTTGTGAATACATCTGGGATGACACTTCACATCCGTCAGgtacatattgctttgc-ttcagatcaaatttccatccagt--gttggatcattattacaagagtgctgtttggcactgaata-aattgcatcc-ctagttgaacataagagtca-atctttgcttttcctccagtta----agcgagctaagaag--tacgtatatcatacctgagcctgccttttctttgctcttatgaag

upper sequence: GRMZM2G094255_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g52710.2 (Oryza sativa), 5'ss of exon 6
CTTACAGAAAAGTTTCATTTATTCGTTTTGGTCCCAGCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTTCACATCCGTCAGgtacatattgctgtccgctcaaatcaaattctcctcaaaacagctggatcagtgatacaattttagtcacgggcattttgtagaatcatattgactggctgagcataaggccaagatggttgagttttctctattttttatagcgaatttgcatgaccccgtccctatcacctgatctcgctccatactgtcttttgaag
                                     || ||||||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||| | |  ||| ||||||||  | || |    | ||||||| |  |||||   |  |    |||| |   || |||   ||   || | ||| ||||||    | ||  |||  ||| ||| |                                                                   
-------------------------------------CTAGTTGAGCACTTTTTCCAATCTCTTGTGAATACATCTGGGATGACACTTCACATCCGTCAGgtacatattgctttgc-ttcagatcaaatttccatccagt--gttggatcattattacaagagtgctgtttggcactgaata-aattgcatcc-ctagttgaacataagagtca-atctttgcttttcctccag------------------------------------------------------------------

upper sequence: GRMZM2G094255_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g52710.1 (Oryza sativa), 5'ss of exon 6
CTTACAGAAAAGTTTCATTTATTCGTTTTGGTCCCAGCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTTCACATCCGTCAGgtacatattgctgtccgctcaaatcaaattctcctcaaaacagctggatcagtgatacaattttagtcacgggcattttgtagaatcatattgactggctgagcataaggccaagatggttgagttttctctattttttatagcgaatttgcatgaccccgtccctatcacctgatctcgctccatactg--tcttttgaag
                                     || ||||||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||| | |  ||| ||||||||  | || |    | ||||||| |  |||||   |  |    |||| |   || |||   ||   || | ||| ||||||    | ||  |||  ||| ||| | ||     |||||  |   | |    |||   |   |||||| |  ||    |  |   |||| |||||
-------------------------------------CTAGTTGAGCACTTTTTCCAATCTCTTGTGAATACATCTGGGATGACACTTCACATCCGTCAGgtacatattgctttgc-ttcagatcaaatttccatccagt--gttggatcattattacaagagtgctgtttggcactgaata-aattgcatcc-ctagttgaacataagagtca-atctttgcttttcctccagtta----agcgagctaagaag--tacgtatatcatacctgagcctgccttttctttgctcttatgaag

upper sequence: GRMZM2G094255_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G28420.2 (Glycine max), 5'ss of exon 6
CTTACAGAAAAGTTTCATTTATTCGTTTTGGTCCCAGCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTTCACATCCGTCAGgtacatattgctgtccgctcaaatcaaattctcctcaaaacagctggatcagtgatacaattttagtcacgggcattttgtagaatcatattgactggctgagcataaggccaagatggttgagttttctctattttttatagcgaatttgcatgaccccgtccctatcacctgatctcgctccatactgtcttttgaag
                                      |||| ||||| |||||||||||  |||||||||| ||||| ||||| |||||||| |  ||||||   ||   |      ||| |   | || |  |||       |  ||  || | | |  || |  ||      | |   |||| |||| ||| || |||   ||                                                                                              
-------------------------------------TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgtattaatacatagaacttcataatcagttatagtca------ttaaatttgtaa-atatattcatgcatatcattatgaaagaaacatactgaatg-ctgtagatgt--------------------------------------------------------------------------------------------

upper sequence: GRMZM2G094255_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT4G14910.1 (Arabidopsis thaliana), 5'ss of exon 6
CTTACAGAAAAGTTTCATTTATTCGTTTTGGTCCCAGCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTTCACATCCGTCAGgtacatattgctgtccgctcaaatcaaattctcctcaaaaca-gctggatcagtgatacaattttagtcacgggcattttgtagaatcatattgactggctgagcataaggccaagatggttgagttttctctattttttatagcgaatttgcatgaccccgtccctatcacctgatctcgctccatactgtcttttgaag
                                      |||| || ||||||||||| ||  ||||||| || ||||| ||||||||||||||||| ||||||                  | || |||  | || ||| ||  |  |  || | | | ||  ||| |        |||  |       | |||||   |    | | |    |||||  |||| |  | ||||||| ||||  |                                                        
-------------------------------------TTGGTGGAACACTTCTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGgtattag-------------gattccaatctttcttaaagcatacgaggacaataacagaacgttaat-------gtttcat------ctgttgacaaacctttcttga---taagat--ttgattcatttctatttattatgacag------------------------------------------------------

upper sequence: GRMZM2G094255_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT3G22425.1 (Arabidopsis thaliana), 5'ss of exon 5
CTTACAGAAAAGTTTCATTTATTCGTTTTGGTCCCAGCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTTCACATCCGTCAGgtacatattgctgtccgctcaaatcaaattctcctcaaaacagctggatcagtgatacaattttagtcacgggcattttgtagaatcatattgactggctgagcataaggccaagatggttgagttttctctattttttatagcgaatttgcatgaccccgtccctatcacctgatctcgctccatactgtcttttgaag
  |   |  ||   |  ||||  | ||    |   || |||| |||||||| ||||| ||  ||||||| || ||||| ||||||||||||||||| ||||||| |  || |           ||||||  |||  ||   | |   |||    || || |||    || | |  | ||         |||   ||| ||| | |  |   ||  |  |||   |  | | | ||| ||| | |                                                        
AGTGTTGCCAAAAATTGTTTAACCTTTCGATTTGTAGTTGGTGGAGCACTTTTTCCAGTCGTTGGTGAATACTTCTGGTATGACTCTTCACATCCGGCAGgtactttgtgat-----------tcaaatcttccaaaagctaacaaaatc----atgcagttt----catgagtttctt--------ctatcctctgtctgtggaccatttcataacagttt--taatatttgtttgttacaacag------------------------------------------------------

upper sequence: GRMZM2G094255_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT3G22425.2 (Arabidopsis thaliana), 5'ss of exon 6
CTTACAGAAAAGTTTCATTTATTCGTTTTGGTCCCAGCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTTCACATCCGTCAGgtacatattgctgtccgctcaaatcaaattctcctcaaaacagctggatcagtgatacaattttagtcacgggcattttgtagaatcatattgactggctgagcataaggccaagatggttgagttttctctattttttatagcgaatttgcatgaccccgtccctatcacctgatctcgctccatactgtcttttgaag
                                      |||| |||||||| ||||| ||  ||||||| || ||||| ||||||||||||||||| ||||||| |  || |           ||||||  |||  ||   | |   |||    || || |||    || | |  | ||         |||   ||| ||| | |  |   ||  |  |||   |  | | | ||| ||| | |                                                        
-------------------------------------TTGGTGGAGCACTTTTTCCAGTCGTTGGTGAATACTTCTGGTATGACTCTTCACATCCGGCAGgtactttgtgat-----------tcaaatcttccaaaagctaacaaaatc----atgcagttt----catgagtttctt--------ctatcctctgtctgtggaccatttcataacagttt--taatatttgtttgttacaacag------------------------------------------------------