1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCCAAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTATGGAAAGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaacttggaactctacatctggttcctgtgttctgtttatatatgacaatttacatgatgatctccaccttttggtgttctatcag
species | Zea mays |
transcript | GRMZM2G094051_T05 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCEST: gi|211044671|gb|FL025842.1|FL025842
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: AGCTGCATAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG GGCTTGGGCAAGCACAACACCATCTGCATTGAGGATCTTGTTCACGAGATCEST: gi|71425539|gb|DR806740.1|DR806740
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCEST: gi|101401380|gb|EB822367.1|EB822367
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: AGCTGAACAAGCAGAGGATTCCTCTGTCCAACAACCAAGTCATCGAGGAG GGGTTGGGCAAGCACAACATCATCTCCATTGAGGATCTTGTTCACGAGATCEST: gi|211041713|gb|FL025836.1|FL025836
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCEST: gi|94472207|gb|EB701165.1|EB701165
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCEST: gi|32849509|gb|CD989190.1|CD989190
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCEST: gi|28873719|gb|CB329668.1|CB329668
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCEST: gi|211041715|gb|FL025838.1|FL025838
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: GCTG-CCTTAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCEST: gi|60349517|gb|DN216490.1|DN216490
genomic: GCTGAAC-AAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCEST: gi|60399095|gb|DN231909.1|DN231909
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCEST: gi|211041716|gb|FL025839.1|FL025839
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: ATCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCEST: gi|33090919|gb|CF050913.1|CF050913
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCEST: gi|67013052|gb|CO441801.1|CO441801
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCGCGAGATCEST: gi|15632506|gb|BI679599.1|BI679599
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: CCCTCTATCAAACAACCAAGTCATCGAGGAG GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCEST: gi|76281807|gb|DV021375.1|DV021375
genomic: CCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: AGCTGAACAAGCAGAGGTTCCCTCTGTCCAACAACCAAGTCATCGAGGAG GGGTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCEST: gi|6448416|gb|AW181182.1|AW181182
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: CAAGCAGAGGATCCCTCTATCAAACAACCAAGTCATCGAGGAG GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: CAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCAAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTATGGAAAGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaacttggaactctacatctggttcctgtgttctgtttatatatgacaatttacatgatgatctccaccttttggtgttctatcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG