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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgttagttattgcttgattctgcacatcaattattagctaatttggtagcattggcttcacttttctattgcttcaaaggggcagtgttaaccatcttttcttttgtaacag

Basic information

species Zea mays
transcript GRMZM2G094039_T06
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094039_T06 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 5
GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgttagttattgcttgattctgcacatcaattattagctaatttggtagcattggcttcacttttctattgcttcaaaggggcagtgttaaccatcttttcttttgtaacag---------
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    ||| ||||||||||| ||||||| ||| | |||| ||||||    | |||| | |||| |||||  ||||| |||   || ||||||||||| ||| |  |           
GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgtga----ttgtttgattctgcatatcaattcttaacaaattcggtagctgctgattcattcttctgttgctgaaaaggagcatgcttgaccatcttttcctttctttcttctaaaatag

upper sequence: GRMZM2G094039_T06 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA06G08480.2 (Glycine max), 5'ss of exon 5
GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgttagttattgcttgattctgcacatcaattattagctaatttggtagcattggcttcacttttctattgcttcaaaggggcagtgttaaccatcttttcttttgtaacag--------------------------------------------------------------
|| |||||||| | |||||||||||||||||||| ||||   || ||||||||||| ||||| ||||| |||||||| || || |||||||||||||||||| |||   ||||| ||||   || ||  | | || | |  |  ||   |   |      |  |||    |||    ||  |        ||  ||  ||||  || |  |                                                                  
GGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATgtctgtggattatt-cttggc-cttcagtttatttctca--tgtttcattcttaagtctcttgcttacaaattaaaccatggctttttccttggcctgctttctttgtccagggatgcagtgtatcttggttgtgtctgcttactttaacttctttcttgttctttatcatattcag

upper sequence: GRMZM2G094039_T06 (Zea mays), 5'ss of exon 5
lower sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 6
GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgttagttattgcttgattctgcac-atcaattatt----agctaatttggtagc---attggcttcacttttctattgcttcaaaggggcagtgttaaccat--cttttcttttgtaacag------------------------------------------------------
|| ||||| || | |||||||||||||||||||| ||||   || || |||||||| ||||| ||||| |||||||| || || ||||||||||||||||||||||   || |   | |    |||   |||  | |||    |  | ||||  || |   |     | | |   ||| ||  ||      |      ||  |||   || | | | ||||  |                                                       
GGACCAAGTTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTTCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATgtgtgtgcattgtccttggcccttgctttatctctcattctgtattttattttctaacctaaccaattacccagatctgttttttgggcctgttttgtttgtccaggactgtacctctgtattatgtttgtgtcctttttgttttaacatgattttccttgctttacaatatccaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71432790|gb|DR813840.1|DR813840
EST:     TGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCAT                         ATATGCATGAGTTGCGGCTTATCCACACTGATCTGAAGCCAGAAAACATAC
genomic: TGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgttagt ... tttgtaacagATATGCATGAGTTGCGGCTTATCCACACTGATCTGAAGCCAGAAAACATAC
EST: gi|26559327|gb|CA831562.1|CA831562
EST:     TGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCAT                         ATATGCATGAGTTGCGGCTTATCCACACTGATCTGAAGCCAGAAAACATAC
genomic: TGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgttagt ... tttgtaacagATATGCATGAGTTGCGGCTTATCCACACTGATCTGAAGCCAGAAAACATAC