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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGGgtaggcacgcagtaggctcttgtgacgcagagttcatggcatgctggcgcattgtgcttaattgatctgtttttttttttttacttacacgcag

Basic information

species Zea mays
transcript GRMZM2G093858_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093858_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g04420.1 (Oryza sativa), 5'ss of exon 4
GCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGGgtaggcacgcagtaggctcttgtgacgcagagttcatggcatgctggcgcattgtgcttaattgatctgtttttttttttttacttacacgcag
| ||| ||| ||| |  ||   |||||| ||||| |||| ||| ||||||||||| ||||||||  |||||||||| || || |||||||||  |  |||   | |  | |     ||  ||||  |  ||   | | ||     |   |||   ||  | |  ||  |||    |||||
GTGAAAACATTGCACATCTCCGGTGGGATTTGAGGGTAAACATAGCTCTGGATGTTGCTCGGGGCTTGGAGTACCTACATGATGGGgtaggc-tgttgta---tttcataattggaag--catgatacacta-tgaaatgcaacca---gattccttgatctcattcaactctagcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148928132|gb|EC872655.2|EC872655
EST:     TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGG                         GCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTG
genomic: TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGGgtaggcacgc ... ttacacgcagGCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTG
EST: gi|149073410|gb|EE161714.2|EE161714
EST:     TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGG                         GCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTG
genomic: TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGGgtaggcacgc ... ttacacgcagGCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTG
EST: gi|148930222|gb|EC872656.2|EC872656
EST:     TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGG                         GCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTG
genomic: TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGGgtaggcacgc ... ttacacgcagGCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTG
EST: gi|148997914|gb|EE035902.2|EE035902
EST:     TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGG                         GCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTG
genomic: TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGGgtaggcacgc ... ttacacgcagGCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTG