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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAGgtgtgcatcccaaaatacttgcataaaagcatcaactgttatttcaagcttgaaacctgtttttgtgctgtctgttgctcttttgtttaattatttctctgttttttag

Basic information

species Zea mays
transcript GRMZM2G093359_T02
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149090120|gb|EE179418.2|EE179418
EST:     GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAG                         AGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
genomic: GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAGgtgtgcatcc ... tgttttttagAGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
EST: gi|149089319|gb|EE178541.2|EE178541
EST:     GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAG                         AGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
genomic: GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAGgtgtgcatcc ... tgttttttagAGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
EST: gi|149008951|gb|EE041170.2|EE041170
EST:     GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAG                         AGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
genomic: GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAGgtgtgcatcc ... tgttttttagAGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
EST: gi|12046552|gb|BF728691.1|BF728691
EST:     GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAG                         AGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
genomic: GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAGgtgtgcatcc ... tgttttttagAGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
EST: gi|78180016|gb|DV550389.1|DV550389
EST:     GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAG                         AGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
genomic: GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAGgtgtgcatcc ... tgttttttagAGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
EST: gi|6973663|gb|AW438237.1|AW438237
EST:     GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAG                         AGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
genomic: GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAGgtgtgcatcc ... tgttttttagAGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
EST: gi|149094603|gb|EE180134.2|EE180134
EST:     GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAG                         AGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
genomic: GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAGgtgtgcatcc ... tgttttttagAGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
EST: gi|101398071|gb|EB820910.1|EB820910
EST:     GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAG                         AGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
genomic: GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAGgtgtgcatcc ... tgttttttagAGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
EST: gi|31350712|gb|CD435069.1|CD435069
EST:     GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAG                         AGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
genomic: GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAGgtgtgcatcc ... tgttttttagAGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
EST: gi|31355275|gb|CD439632.1|CD439632
EST:     GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAG                         AGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
genomic: GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAGgtgtgcatcc ... tgttttttagAGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
EST: gi|71424525|gb|DR806344.1|DR806344
EST:     GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAG                         AGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
genomic: GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAGgtgtgcatcc ... tgttttttagAGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
EST: gi|149106513|gb|EE188405.2|EE188405
EST:     GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAG                         AGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
genomic: GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAGgtgtgcatcc ... tgttttttagAGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA
EST: gi|89253028|gb|DY624814.1|DY624814
EST:     GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAG                         AGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGCCCCTCTCA
genomic: GGACGAGCATCATCTATAGTTGTGTCTGGAACCGATGTAATTAGGCCCAGgtgtgcatcc ... tgttttttagAGGACAAGGACATCCAACAGGAAACTCCGCTCCTTATTTTGGTCCCTCTCA