Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTGCGTTCTTTTTTTGATATTTCGGGTTGTTGAGCGCTCTGGGCACAGATTGATGCTTGTTTACATAGCAATCTGTTCATTAATGGGATCTCTTACGgtacatgagaattacgtcatcttaatattagattatttttaaaaattgctcatttatcttctattaacataattttatgattgggcag

Basic information

species Zea mays
transcript GRMZM2G092991_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092991_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g29510.1 (Oryza sativa), 5'ss of exon 6
GGCCTGCGTTCTTTTTTTGATATTTCGGGTTGTTGAGCGCTCTGGGCACAGATTGATGCTTGTTTACATAGCAATCTGTTCATTAATGGGATCTCTTACGgtacatgagaattacgtcatcttaatattagattatttttaaaaat-tgctcatttatcttctattaacataattttatgattgggcag--
||  |  ||||| |||||||| ||  |||||| ||| || ||||| |||||   |||||||||||| || ||||||||||||  |||||||||||| |||||| || |||  ||| ||| |||   |||   ||| ||  |   || || | | | ||  |  ||||| | |||| |    || || |   
GGTGTCTGTTCTATTTTTGATTTTCTGGGTTGCTGAACGTTCTGGACACAGGAAGATGCTTGTTTATATTGCAATCTGTTCAACAATGGGATCTCTCACGgtatataagacatacatcacctttggattcagttaattgaatggatgtggttagtgattgtggattaatacaattatggtttttggaacag