1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaatggacatctgatattcaagcttagttcatgtatctcaatttgcattggtataccatgattaggtaacacctgacaaacgggtatgagtagg...
species | Zea mays |
transcript | GRMZM2G092988_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG GGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTGEST: gi|211194336|gb|FL162075.1|FL162075
genomic: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTG
EST: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG GCCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTGEST: gi|18180641|gb|BM381851.1|BM381851
genomic: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTG
EST: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG GGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTGEST: gi|211191945|gb|FL162071.1|FL162071
genomic: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTG
EST: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG GGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTGEST: gi|211296288|gb|FL479992.1|FL479992
genomic: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTG
EST: TCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG GGCATATGGCTKTGCGAACATCGAGMCCATGCCAGCCCTCGCAAAATTGTGEST: gi|16919476|gb|BM074210.1|BM074210
genomic: TCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTG
EST: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG GGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTGEST: gi|211509961|gb|FL438234.1|FL438234
genomic: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTG
EST: CCCTAACGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG GGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTGEST: gi|84977403|gb|DW475825.1|DW475825
genomic: CCCTAACGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTG
EST: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG GGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTGEST: gi|14245643|gb|BG874225.1|BG874225
genomic: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTG
EST: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG GGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTGEST: gi|6695846|gb|AW288954.1|AW288954
genomic: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTG
EST: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG GGCATATGGCTGTGCGAACATCGAGGGCATGCCAGCCCTCGCAAAATTGTGEST: gi|37381219|gb|CF627481.1|CF627481
genomic: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTG
EST: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG GGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTGEST: gi|211121909|gb|FL435146.1|FL435146
genomic: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTG
EST: ATGGACGTCTCAATACGGGCACTTGGCAG GGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTGEST: gi|211194338|gb|FL162077.1|FL162077
genomic: ATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTG
EST: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG GGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTEST: gi|166563906|gb|EG258078.1|EG258078
genomic: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATT
EST: CCCTAACGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG GGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAAEST: gi|211121910|gb|FL435147.1|FL435147
genomic: CCCTAACGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAA
EST: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG GGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTGEST: gi|211191948|gb|FL162074.1|FL162074
genomic: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTG
EST: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG GGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTG
genomic: GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaat ... tttgtttcagGGCATATGGCTGTGCGAACATCGAGACCATGCCAGCCCTCGCAAAATTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAGgtgagggaatggacatctgatattcaagcttagttcatgtatctcaatttgcattggtataccatgattaggtaacacctgacaaacgggtatgagtagg
- - - - - - GATGGA