1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTGTCAATTGGAGACCAGCAGAAGACAAGGCAGTAGGAGCAAATGACTTGCTCATTAAGCACATACAGGAAAAAATCAAAGCAAAACGTGGGAAATCAGAgtaagatctccattctatcagaaagtacttatggtctcggcaacattttattaatttgagcttttatgtaatacag
species | Zea mays |
transcript | GRMZM2G092586_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTCATTAAGCACATACAGGAAAAAATCAAAGCAAAACGTGGGAAATCAGA GTCCACGTTTTATGTTGTTGCTGATGCAACCATTTTAAGGTTCATGATGGAEST: gi|18964793|gb|BM661228.1|BM661228
genomic: CTCATTAAGCACATACAGGAAAAAATCAAAGCAAAACGTGGGAAATCAGAgtaagatctc ... tgtaatacagGTCCACGTTTTATGTTGTTGCTGATGCAACCATTTTAAGGTTCATGATGGA
EST: CTCATTAAGCACATACAGGAAAAAATCAAAGCAAAACGTGGGAAATCAGA GTCCACGTTTTATGTTGTTGCTGATGCAACCATTTTGAGGTTCATGATGGAEST: gi|18965156|gb|BM661423.1|BM661423
genomic: CTCATTAAGCACATACAGGAAAAAATCAAAGCAAAACGTGGGAAATCAGAgtaagatctc ... tgtaatacagGTCCACGTTTTATGTTGTTGCTGATGCAACCATTTTAAGGTTCATGATGGA
EST: CTCATTAAGCACATACAGGAAAAAATCAAAGCAAAACGTGGGAAATCAGA GTCCACGTTTTATGTTGTTGCTGATGCAACCATTTTAAGGTTCATGATGGA
genomic: CTCATTAAGCACATACAGGAAAAAATCAAAGCAAAACGTGGGAAATCAGAgtaagatctc ... tgtaatacagGTCCACGTTTTATGTTGTTGCTGATGCAACCATTTTAAGGTTCATGATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTCAATTGGAGACCAGCAGAAGACAAGGCAGTAGGAGCAAATGACTTGCTCATTAAGCACATACAGGAAAAAATCAAAGCAAAACGTGGGAAATCAGAgtaagatctccattctatcagaaagtacttatggtctcggcaacattttattaatttgagcttttatgtaatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA