1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGATGATGGATCTTATGGATGTGAGCACTGAAATACAAGAAACTCTTGGCAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttcaactatcctgacactttgatttctcttggatatttgcaaacgctatatatatatatatatttttcaaaccgcatacattgctacaaagcttatgaaggagcaaaaactcctttatctctctgctgtccctcattttgtttcttggaaaatgcag
species | Zea mays |
transcript | GRMZM2G092468_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGG AGCTCGATGCTTTGGAAGCEST: gi|211387542|gb|FL169282.1|FL169282
genomic: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttca ... gaaaatgcagAGCTCGATGCTTTGGAAGC
EST: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGG AGCTCGATGCTTTGGTAGCCGACATGGACTTCGAATCAGAGTCAGTCCCATEST: gi|211394823|gb|FL369347.1|FL369347
genomic: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttca ... gaaaatgcagAGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCAT
EST: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGG AGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCATEST: gi|24934372|gb|CA452590.1|CA452590
genomic: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttca ... gaaaatgcagAGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCAT
EST: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGG AGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCATEST: gi|17932462|gb|BM269422.1|BM269422
genomic: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttca ... gaaaatgcagAGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCAT
EST: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGG AGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCATEST: gi|32908604|gb|CF013417.1|CF013417
genomic: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttca ... gaaaatgcagAGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCAT
EST: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGG AGCTCGATGCTTTGGAAGCCGACATEST: gi|32844108|gb|CD983789.1|CD983789
genomic: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttca ... gaaaatgcagAGCTCGATGCTTTGGAAGCCGACAT
EST: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGG AGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCATEST: gi|18170299|gb|BM340139.1|BM340139
genomic: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttca ... gaaaatgcagAGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCAT
EST: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGG AGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCATEST: gi|32844472|gb|CD984153.1|CD984153
genomic: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttca ... gaaaatgcagAGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCAT
EST: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGG AGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCATEST: gi|32916309|gb|CF021121.1|CF021121
genomic: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttca ... gaaaatgcagAGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCAT
EST: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGG AGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCATEST: gi|32850682|gb|CD990363.1|CD990363
genomic: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttca ... gaaaatgcagAGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCAT
EST: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGG AGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCATEST: gi|4609483|gb|AI600322.1|AI600322
genomic: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttca ... gaaaatgcagAGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCAT
EST: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGG AGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCATEST: gi|76286967|gb|DV026535.1|DV026535
genomic: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttca ... gaaaatgcagAGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCAT
EST: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGG AGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCATEST: gi|17929488|gb|BM266448.1|BM266448
genomic: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttca ... gaaaatgcagAGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCAT
EST: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGG AGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCATEST: gi|87151661|gb|DY396450.1|DY396450
genomic: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttca ... gaaaatgcagAGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCAT
EST: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGG AGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCAT
genomic: CAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttca ... gaaaatgcagAGCTCGATGCTTTGGAAGCCGACATGGACTTCGAATCAGAGTCAGTCCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATGATGGATCTTATGGATGTGAGCACTGAAATACAAGAAACTCTTGGCAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttcaactatcctgacactttgatttctcttggatatttgcaaacgctatatatatatatatatttttcaaaccgcatacattgctacaaagcttatgaaggagcaaaaactcctttatctctctgctgtccctcattttgtttcttggaaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC