Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGAAACACAAGAGTTGATTGACGCAGAACTCTCTGCCCGTGTACTACAGTTGATAAGTGTGACTGATACAGGAGCGCACACACAGgttagatgaaactgatttatccacttaaggccttgttcggttgcatctggatcgaaggggattgagagggattaaaaccccttttattcatttatgacta...

Basic information

species Zea mays
transcript GRMZM2G092261_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092261_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g42050.1 (Oryza sativa), 5'ss of exon 14
TCAAGAAACACAAGAGTTGATTGACGCAGAACTCTCTGCCCGTGTACTACAGTTGATAAGTGTGACTGATACAGGAGCGCACACACAGgttagatgaaactgatttatccacttaaggccttgttcggttgcatctggatcgaaggggattgagagggattaaaaccccttttattcatttatgacta---
|||||| |||| ||||| |||||||||||||| | |||||||| |||||||||||| || ||||| ||||| | |||| |||||||||||||||| |||||| || ||| | ||| || | | || | || ||||| ||| | |
CCAAGAATCACAGGAGTTAATTGACGCAGAACTTGCAGCCCGTGTGTTACAGTTGATAAACGTTACTGACACAGGGGTGCACGCACAGgttagatgaaaatgatttggtcatctaacatgaaagctgagtgc---tgagctagtgtacttgtagcaacaacaattttcctttctagtattgtctgcaaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29167813|gb|CB411073.1|CB411073
EST:     CCCGTGTACTACAGTTGATAAGTGTGACTGATACAGGAGCGCACACACAG                         AGATATCAAGAATTAAGTAAGCAAAGGCTTGACCGAGCTATTCTCATTTTT
genomic: CCCGTGTACTACAGTTGATAAGTGTGACTGATACAGGAGCGCACACACAGgttagatgaa ... gtctttgcagAGATATCAAGAATTAAGTAAGCAAAGGCTTGACCGAGCTATTCTCATTTTT