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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGAAACACAAGAGTTGATTGACGCAGAACTCTCTGCCCGTGTACTACAGTTGATAAGTGTGACTGATACAGGAGCGCACACACAGgttagatgaaactgatttatccacttaaggccttgttcggttgcatctggatcgaaggggattgagagggattaaaaccccttttattcatttatgacta...

Basic information

species Zea mays
transcript GRMZM2G092261_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092261_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g42050.1 (Oryza sativa), 5'ss of exon 14
TCAAGAAACACAAGAGTTGATTGACGCAGAACTCTCTGCCCGTGTACTACAGTTGATAAGTGTGACTGATACAGGAGCGCACACACAGgttagatgaaactgatttatccacttaaggccttgttcggttgcatctggatcgaaggggattgagagggattaaaaccccttttattcatttatgacta---
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CCAAGAATCACAGGAGTTAATTGACGCAGAACTTGCAGCCCGTGTGTTACAGTTGATAAACGTTACTGACACAGGGGTGCACGCACAGgttagatgaaaatgatttggtcatctaacatgaaagctgagtgc---tgagctagtgtacttgtagcaacaacaattttcctttctagtattgtctgcaaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37383971|gb|CF629028.1|CF629028
EST:     CCCGTGTACTACAGTTGATAAGTGTGACTGATACAGGAGCGCACACACAG                         ATGGAACCAAGCAGCTCCAAAAGTGGAATATTCCTCGAATATACTGCATCT
genomic: CCCGTGTACTACAGTTGATAAGTGTGACTGATACAGGAGCGCACACACAGgttagatgaa ... ttgattccagATGGAACCAAGCAGCTCCAAAAGTGGAATATTCCTCGAATATACTGCATCT