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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTTAATTGGCTTGACTTCACATGGCAACCTATTGATGAGATTTACTCCTACTTTGGAACAAAGgtagaactgtgtccagtgcagcttatttgcactatatttaatttatgttccatcatgtctaaagcatggtaatagtttttttctaccttctacttgattaaacctccactttgaactgcag

Basic information

species Zea mays
transcript GRMZM2G091494_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091494_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g51040.1 (Oryza sativa), 5'ss of exon 5
TGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTTAATTGGCTTGACTTCACATGGCAACCTATTGATGAGATTTACTCCTACTTTGGAACAAAGgtagaactgtgtc-cagtgcagcttatttgcactatatttaatttatgttccatcatgtctaaagcatggtaatagtttttttctaccttctacttgattaaacctccactttgaactgcag
||||||||| |||||||||||||||||||  |||||||| || ||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| | | ||    |  ||  |||     || ||||||||||||||  | ||  | ||| |||||    ||  || |     ||  |||||||  || |||  |     | ||| |||||
TGAAATTAAAAGGAAGCAACTCCTGAGAAGCTGGGCACTCAAGTGGTTTGATTTCACATGGCAACCTATTGATGAAATTTACTCTTACTTTGGAACAAAGgtagaccagcgtgattgcacatgttacacctaccatatttaatttatgaactattctatctgaagcaaatcaa--gtatcacctta--ttctactccataaaatttaattctggaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76282717|gb|DV022285.1|DV022285
EST:     ACTTCACATGGCAACCTATTGATGAGATTTACTCCTACTTTGGAACAAAG                         ATTGCAACATACTTTGCGTTCCTAGGAATGTATACACGAT
genomic: ACTTCACATGGCAACCTATTGATGAGATTTACTCCTACTTTGGAACAAAGgtagaactgt ... tgaactgcagATTGCAACATACTTTGCGTTCCTAGGAATGTATACACGAT