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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCCAGTTGAATGAGCATGCGAAGCTCTCCATGTTGAGGAATGCCACCTGGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgtcgtagacaagacttctttaattgcttttctgtaacagtggttactaaataaacatgttattctttgactgttacag

Basic information

species Zea mays
transcript GRMZM2G091119_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 5
AGCCCAGTTGAATGAGCATGCGAAGCTCTCCATGTTGAGGAATGCCACCTGGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgtcgtagacaagacttctttaattgcttttct-----gtaacagtggttactaaataaacatgttattctttgactgtta-cag
||| ||||||||||||||  | || ||||| ||| | |||||||| || |||||| | || ||||| ||||| ||||| ||||||||||||||||| |||||  | |||||   ||||||     ||  | |     |||      |  | |   | |||||| | ||  |||  ||| |  ||
AGCACAGTTGAATGAGCACACTAAACTCTCTATGCTAAGGAATGCAACTTGGACTTTATCGAACTTCTGCAGAGGAAAACCACAGCCATCATTTGAACAGgtt-tggacaaagtttctttgtactctactgtagttagtagggaaagacagttccttaacatgatgtttattgggtgtcaatag

upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA17G03430.1 (Glycine max), 5'ss of exon 5
AGCCCAGTTGAATGAGCATGCGAAGCTCTCCATGTTGAGGAATGCCACCTGGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgtcgtaga-caagacttctttaattgcttttctgtaacagtggttactaa-ataaacatgttattc---tttgactgttacag
 |||||||||||||||||||| || || || ||| |||| |||||||| |||||  | || |||||||||||||| |||||||||||  | ||||| |||||  ||   |   | ||  || |||    ||  |  ||||||  |  |    ||  | | ||  |    ||| | ||  ||||
GGCCCAGTTGAATGAGCATGCAAAACTTTCAATGCTGAGAAATGCCACATGGACATTATCTAACTTTTGCAGGGGTAAGCCACAGCCTCCGTTTGAGCAGgtaatatctcttaaattggttcattaaacttgcgagacagtgtcttttggcgtattcttattgctaatatttaattg--acag

upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA03G39210.1 (Glycine max), 5'ss of exon 6
AGCCCAGTTGAATGAGCATGCGAAGCTCTCCATGTTGAGGAATGCCACCTGGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgt-cgtagacaagacttctttaattgctttt-ctgtaacagtggttactaaataaa-catgttattctttgact-gttacag------------------
 || || |||||||||||||| ||||| || ||| | || ||||| |||||||| || || || || |||||||| || ||||||||  | |||||||||||  |  |  | || ||   | ||      |  |  |    ||| | ||   |  | | | ||||||||    | | || |                   
GGCACAATTGAATGAGCATGCCAAGCTTTCTATGCTAAGAAATGCTACCTGGACACTATCGAATTTCTGCAGGGGGAAACCACAGCCTGCTTTTGATCAGgtatgatgttatgaattgcatgatcttaaatattaaagttttggctccttccttcatctttttattcttcattttgctataaaataaaatatctctcatg

upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 5
AGCCCAGTTGAATGAGCATGCGAAGCTCTCCATGTTGAGGAATGCCACCTGGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgt-cgtagacaag----acttctt-taattg--cttttctgtaacagtggttactaaataaacatgttattct--ttgactgttacag-------------
 || || || ||||| ||||| ||||| || ||| | || ||||| |||||||| || || ||||| |||||||| |||||||||||  | |||||||||||  | | | | |     |||||  || ||   | ||||| |     | | ||    ||   | ||||| | |  | || || | ||              
GGCACAATTAAATGAACATGCCAAGCTTTCTATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGgtatgaaaatatgtattgcttctcctagttaaccatttcttttcatttcgctatagtattctc-tgttaatatgatggaatgctgcaattttttttttatt

upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA09G04430.1 (Glycine max), 5'ss of exon 5
AGCCCAGTTGAATGAGCATGCGAAGCTCTCCATGTTGAGGAATGCCACCTGGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgtcgtagacaagacttctttaattg----cttttctgtaacagtggttactaaataaacatgttattctttg-actgttacag----
 |||||||||||||| ||||| || || || |||||||| || || || ||||| ||||| ||||| |||||||| |||||||||||  ||||||| |||||  | | |     ||  |||||||    |  | |||||| ||   ||  |   ||   || ||| | |  | | | | |  |    
GGCCCAGTTGAATGAACATGCAAAACTTTCAATGTTGAGAAACGCGACATGGACCCTGTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCATTTGAGCAGgtaattggcctt-tttggttaattgaaatcaatcctgtaagagaacttgtt---taggtatattaatatgggtattttgatggacag

upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G29000.1 (Glycine max), 5'ss of exon 5
AGCCCAGTTGAATGAGCATGCGAAGCTCTCCATGTTGAGGAATGCCACCTGGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgtcgtagacaagacttctttaattgcttttctgtaacagtggttactaaataaacat-gttattctttgactgttacag------------------------
 || || || ||||| ||||||||||| || ||| | || ||||| |||||||| || || ||||| |||||||| |||||||||||  | |||||||||||  || | || |  | ||   |  | |  ||  | || |  ||  | | | | | |   |||||| | | | | |  |                        
GGCACAATTAAATGAACATGCGAAGCTTTCTATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGgt-ataaa-aatatgtattgcttctcctagcta-accatttctttttcatttagctttagtattctgttaatatgatggaatgctgcaatttttttttgtaat

upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA15G15480.1 (Glycine max), 5'ss of exon 5
AGCCCAGTTGAATGAGCATGCGAAGCTCTCCATGTTGAGGAATGCCACCTGGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgtcgtagacaagacttctttaattgctttt----ctgtaacagtggttactaaataaacatgttattctttgactgttacag-----
 |||||||||||||||||||| || || ||||||||||| || ||||| ||||| || || ||||| |||||||| |||||||||||  ||||||| ||||| || | |     ||  |||||||   |     |||||| ||   ||  |       | | ||| | |  || | ||   |     
GGCCCAGTTGAATGAGCATGCAAAACTTTCCATGTTGAGAAACGCCACATGGACCCTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCATTTGAGCAGgtagttgtctt--tttggttaattgaaatcaaacctgtaagagaaattgtt---ctggcttattagtatgggaattttgatggacag

upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 5
AGCCCAGTTGAATGAGCATGCGAAGCTCTCCATGTTGAGGAATGCCACCTGGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgtcgtagacaagacttctttaattgcttttctgtaacagtggttactaaataaacatgttattctttgactgttacag----------------------
 || || |||||||||||||| ||||| || ||| | || ||||| |||||||| || || || || |||||||| || ||||||||  | |||||||||||   |    |    |  |  ||||| |      || | ||     |    |      ||  |||||   |  | ||                       
GGCACAATTGAATGAGCATGCCAAGCTTTCTATGCTAAGAAATGCTACCTGGACACTATCGAATTTCTGCAGGGGGAAACCACAGCCTGCTTTTGATCAGgtatgaagttatctgttatgcattgcatggtctaaatattgaagttttggcaccttccttcgtctttttattcttcattttgatatagaataaaatattt

upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA07G37180.1 (Glycine max), 5'ss of exon 6
AGCCCAGTTGAATGAGCATGCGAAGCTCTCCATGTTGAGGAATGCCACCTGGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgtcgtag-acaagacttctttaattgcttttctgtaacagtggttactaaata--aacatgttattctt--tgactgttacag-------
 |||||||||||||||||||| || || || ||| |||| |||||||| |||||  | || |||||||||||||| |||||||||||  | ||||| |||||  ||  |    |  |||| ||||| ||  ||  |||  | |  |||   |     ||| || || ||  | |   ||  |        
GGCCCAGTTGAATGAGCATGCAAAACTTTCAATGCTGAGAAATGCCACATGGACATTATCTAACTTTTGCAGGGGTAAGCCACAGCCTCCGTTTGAGCAGgtaatatcatttcatctcttaaattggttcacta-aacttttgagactgtcttttggcatattcttattgctaatatttttaattgacag

upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT4G16143.1 (Arabidopsis thaliana), 5'ss of exon 4
AGCCCAGTTGAATGAGCATGCGAAGCTCTCCATGTTGAGGAATGCCACCTGGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgtcg--tagacaagacttctttaattgcttttctgtaac--agtggttactaaataaacatgttattctttgactgttacag
  | ||||||||||||||||| || ||||| ||| |||| ||||| || ||||| || || || || |||||||| |||||||||||  | ||||| |||||        ||   ||   |||||  ||   |    |   ||  |||  |   |  |  | || |  | |     | ||||
CTCTCAGTTGAATGAGCATGCTAAACTCTCGATGCTGAGAAATGCTACTTGGACCCTCTCTAATTTCTGCAGGGGCAAGCCACAGCCTCCCTTTGACCAGgtttgtctctcattcctatcttaatctctgcccaaagatgaaggagtttttctttttaattcttgtgatctcttaataacag

upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 5
AGCCCAGTTGAATGAGCATGCGAAGCTCTCCATGTTGAGGAATGCCACCTGGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgtcgtagacaagacttctttaattgcttttctgtaacagtggttactaaataaacatgttattctttgactgttacag------------------
 || || || ||||||||||| || || || |||||||| ||||| || |||||  |||| || || |||||||| |||||||||||   |||||| |||||   |  |   |  |  |  ||||  |||   |   |||  ||  ||||   |||  |  | ||  |  | | |                     
GGCTCAATTCAATGAGCATGCAAAACTTTCTATGTTGAGAAATGCAACATGGACATTGTCAAATTTCTGCAGGGGCAAGCCACAGCCTCAATTTGAGCAGgttagactcttaagatgctctattgggtttgaatgctagttttt-ttaaactgacagatcttgctaagtttctgatgtattcaatttattgagtag

upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv05s0077g01430.t01 (Vitis vinifera), 5'ss of exon 5
AGCCCAGTTGAATGAGCATGCGAAGCTCTCCATGTTGAGGAATGCCACCTGGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgtcgtagacaagacttctttaattgcttttctgtaacagtggttactaaataaacatgttattctttgactgttacag------------------------------------------
||| ||||||||||||||||| || || || ||| | || |||||||| |||||||| || ||||| ||||| || ||||| |||||| ||||||||||||| || |    || |  ||  |||| ||     | |        |     |       |  |||  | | | ||||                                            
AGCACAGTTGAATGAGCATGCCAAACTTTCAATGCTAAGAAATGCCACATGGACTCTATCAAACTTCTGCAGAGGCAAGCCTCAGCCACCATTTGATCAGgttgttgctttga-tcattgcattgtttaggattcaagcattgcatcccgtctctccctccttccctaaattttactttgtggttgtctgtagcagtttttaaaccttttgaaattgcag

upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 5
AGCCCAGTTGAATGAGCATGCGAAGCTCTCCATGTTGAGGAATGCCACCTGGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgtc-gtagacaagacttctttaattgcttttctgtaacagtggttactaaataaacatgtt-attctttgactgttacag----------------------
 || |||||||| || ||||| ||||| || ||| | |||||||| |||||||| || || || || || ||||| |||||||||||  | |||||||||||  |  |    || |  | || ||   |||  | ||  ||| |   ||   ||   | || ||   || ||| |  | |                      
GGCACAGTTGAACGAACATGCAAAGCTGTCTATGCTCAGGAATGCTACCTGGACACTTTCAAATTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGgtttgctgttttgaatgttctacttaactttgagaaaatgtgat-ggtagccaatagtatttatctcttcactat-gcggctggacttggttttatgctctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211099873|gb|FL161944.1|FL161944
EST:     GGACTCTTTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAG                         ACTAAGCCTGCTCTGCCAGCACTTGCACGACTTATCCATTCCAACGATGAG
genomic: GGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgtcgtagaca ... actgttacagACTAAGCCTGCTCTGCCAGCACTTGCACGACTTATCCATTCCAACGATGAG
EST: gi|211094922|gb|FL161920.1|FL161920
EST:     GGACTCTTTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAG                         ACTAAGCCTGCTCTGCCAGCACTTGCACGACTTATCCATTCCANCGATGAG
genomic: GGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgtcgtagaca ... actgttacagACTAAGCCTGCTCTGCCAGCACTTGCACGACTTATCCATTCCAACGATGAG