Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcttttcattctaacgttttaaattaataatacaaatacacttgaaattcatctactggaatacaatgttgcgtctgatgccacttccgccca...

Basic information

species Zea mays
transcript GRMZM2G090904_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090904_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g21970.1 (Oryza sativa), 5'ss of exon 5
GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcttttcattctaacgtt----ttaaattaataatacaaatacacttgaaattcatctactggaatacaatgttgcgtctgatgccacttccgccca
|| || ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| || || |||| | |  ||    ||| ||  || |||  |  | | |  | ||  |||| |     ||| |  | | |  | |    |     |||  
GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatcattccattttgatcttcatattacatctatcataacataataat--atatcaatctgcatttgtaccac-tagagcataactagaggattgccg-

upper sequence: GRMZM2G090904_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA18G05730.1 (Glycine max), 5'ss of exon 5
-GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct-tttcattctaacgttttaaattaataatacaaatacacttgaaattcatctactggaatacaatgttgcgtctgatgccacttccgccca--
 |||||||| |||||||||||| |||| |||||||| ||  | || |||||||||||  | || || || |||||||||||||| ||  || | | | | ||||||   | ||      |||||  |  ||     ||   | || |  |  |  |  || |  |     ||   | ||      |  
GGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTATGTTTCTCGTCCTGACAAAATCAGTGCTGCTGAGgtttgtttatatcttattctatgatattgtgcctataatttatgtagg---gatgcttatttgtttcatgatcatttgtctaactataggaattttttgaagt

upper sequence: GRMZM2G090904_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA11G31450.1 (Glycine max), 5'ss of exon 5
GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctctt----ttcattctaacgttttaa-attaataa---tacaaatacacttgaaattcatctactggaatacaatgttgcgtctgatgccacttccgccca
|||||||| ||||| |||||| |||| |||||||| ||  |||| |||||||||||  | || || || |||||||||||||| ||  ||   ||     |  | |||   ||||      |||||   || | |   | | | ||| | | |  |    | |||  |    | |    | | |        
GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGACCTGGAGGATTATGTTTCTCGTCCCGACAAAATCAGTGCTGCTGAGgtttgttatttatatcttgtcctatgatttttgtgccaataagtttatataggaaataggaatgcttgttattagtttcaagatcatttatataactatt--------

upper sequence: GRMZM2G090904_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA11G31470.1 (Glycine max), 5'ss of exon 5
GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcttttcattctaacgttttaaattaataatacaaatacacttgaaattcatctactggaatacaatgttgcgtctgatgccacttccgccca-
|||||||| ||||| |||||| |||| |||||||| ||| |||| |||||||||||  | || || || |||||||||||||| ||  || |||||    ||  | |  ||   |    ||||    ||   | | ||| | | |  |    | ||   |    | |    | | |         
GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAGgtttgtttctttcttgtcctatgacttttgtgcccaataattttatg-taggaatgcttgttattagtttcaggatcatttatctaactattggaagtttt

upper sequence: GRMZM2G090904_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT5G58290.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctctttt------cattctaacgttttaaattaataatacaaatacacttgaaattcatctactggaatacaatgttgc-gtctgatgccacttccgccca
|| |||||  ||||||||||||| |||||||||||||| |||||||| ||||||||  | || ||||| || || |||||||| || ||| | ||||      |||||||   ||     |  ||| |  |  |  ||    |  |   || | |   | |   ||  |   || |||    |        
GTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAGgttagtttattttgcttaccattctattcttcccgct--atagtttacttttaccatgatatatcctccagtgtttctgggtcaccacctaatgatgttctt-----

upper sequence: GRMZM2G090904_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 5
GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctctttt-cattctaacgttttaaattaataatacaaatacacttgaaattcatctactggaatacaatgttgcgt---ctgatgccacttccgccca
||||||||||| || |||||| | |||||||||||||| ||||| || ||||||||  | || ||||| || ||||||||||| || ||  | || |  ||  || | ||  |  ||  |  |      |  | | || ||||  |   | | || ||  ||  ||   |||  |  | ||  |    
GTTTGCACTGCTAAGATGAACTTAAGCGATGAGGTTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttattctgtatcttatctttacagttttcttgttgtctgagtcctcaatttcaaatgtagtactagaac-ttatgttcactgggggaaattttgt---

upper sequence: GRMZM2G090904_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S147_100V6.1 (Physcomitrella patens), 5'ss of exon 5
GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcttttcattctaacgttttaaattaataatacaaatacacttgaaattcatc---tactggaatacaatgttgc--gtctgatgccacttccgccca
|| || ||||| || ||||| || ||||| ||||||||||| ||||| |||||||| || || ||||| || ||||||||||| ||| ||   ||  ||   | |  |  |  |   ||  ||      |  || |||||       ||||||   ||| |||| |  |  ||  |   |||  |    
GTATGTACTGCAAAGATGAATCTAAGCGAGGAGGTTGATTTAGAAGACTATGTTTCTAGGCCTGATAAAATAAGTGCTGCTGAGgtgcgttctttcacagcgtcat-tcctgcac--attttaagtgatcttttaaaatttgataagtactggcgaacactgtttccagattgcagatgcttgtgat--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8665869|gb|BE186685.1|BE186685
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5325178|gb|AI783369.1|AI783369
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|31997670|gb|CD661707.1|CD661707
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|32909086|gb|CF013898.1|CF013898
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5714047|gb|AI944032.1|AI944032
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|32867797|gb|CF007479.1|CF007479
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|22521567|gb|BU080378.1|BU080378
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5343230|gb|AI795415.1|AI795415
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|211390318|gb|FL404124.1|FL404124
EST:     TTGATNTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGC-AAGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGA
EST: gi|32917854|gb|CF022666.1|CF022666
EST:     GTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: GTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|19437229|gb|BM953639.1|BM953639
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|32845316|gb|CD984997.1|CD984997
EST:     GTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: GTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|17921696|gb|BM259347.1|BM259347
EST:     GATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: GATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|60672392|gb|DN475143.1|DN475143
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|60346910|gb|DN213883.1|DN213883
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5361172|gb|AI795592.1|AI795592
EST:     TTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAAAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5819279|gb|AI987485.1|AI987485
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|19351153|gb|BM895685.1|BM895685
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAGCCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|78021940|gb|DV490327.1|DV490327
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|32851324|gb|CD991005.1|CD991005
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|37390393|gb|CF632426.1|CF632426
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|31364533|gb|CD448888.1|CD448888
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAAAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|32867798|gb|CF007480.1|CF007480
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|60400635|gb|DN233442.1|DN233442
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5791247|gb|AI978039.1|AI978039
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|22490945|gb|BU050868.1|BU050868
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|60342267|gb|DN209240.1|DN209240
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|22819702|gb|BU499792.1|BU499792
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|149106686|gb|EE188582.2|EE188582
EST:     TTGATTTGGAAGATTATGTTTCCAGCCCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|60346677|gb|DN213650.1|DN213650
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|60400510|gb|DN233317.1|DN233317
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCC
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCC
EST: gi|60344005|gb|DN210978.1|DN210978
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5791424|gb|AI978216.1|AI978216
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|31910991|gb|CD651701.1|CD651701
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5455929|gb|AI833619.1|AI833619
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|28911182|gb|CB331811.1|CB331811
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5871265|gb|AW017736.1|AW017736
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|37374000|gb|CF623328.1|CF623328
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|6095497|gb|AW120164.1|AW120164
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5871798|gb|AW018269.1|AW018269
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|9951960|gb|BE638543.1|BE638543
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5650157|gb|AI920517.1|AI920517
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|50333574|gb|CO528700.1|CO528700
EST:     TTGATTTGGAAGATTATGTTTCCAGCCCGGATAAGATCAGTGCTGAAGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|149087905|gb|EE287181.2|EE287181
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5847157|gb|AW000236.1|AW000236
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|211474326|gb|FL411635.1|FL411635
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5847504|gb|AW000583.1|AW000583
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGNGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|6095452|gb|AW120119.1|AW120119
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|40336171|gb|CK370241.1|CK370241
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|87151720|gb|DY396509.1|DY396509
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|148937643|gb|EC881836.2|EC881836
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|60401478|gb|DN234285.1|DN234285
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|78074650|gb|DV503084.1|DV503084
EST:     TTGATTTGGAAGATTATGTTTCCAGCCCGGATAAGATCAGTGCTGCTGAT                         ATTGTTGCTATCTGCCAAGAGGGTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|71762983|gb|DR960920.1|DR960920
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|33096522|gb|CF056516.1|CF056516
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTACTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|6056676|gb|AW091081.1|AW091081
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|110516945|gb|EE021532.1|EE021532
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|60357801|gb|DN224774.1|DN224774
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|6194670|gb|AW146774.1|AW146774
EST:     GTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|148938945|gb|EC883308.2|EC883308
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|33466524|gb|CF243573.1|CF243573
EST:     TTGATTTGGAAGATTATGTTTCCAGCCCGGATAAGATCAGTGCTGAAGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|20802317|gb|BQ293367.1|BQ293367
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|31362941|gb|CD447298.1|CD447298
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|60356494|gb|DN223467.1|DN223467
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|161590737|gb|EY958709.1|EY958709
EST:     CGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGACAAAAACCG
genomic: CGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCG-CAAAAACCG
EST: gi|110192481|gb|EC874379.1|EC874379
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGTTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|33770636|gb|CF272930.1|CF272930
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|113702567|gb|EE680071.1|EE680071
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|211465764|gb|FL467280.1|FL467280
EST:     GATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: GATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|60358687|gb|DN225660.1|DN225660
EST:     AGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: AGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|33770883|gb|CF273177.1|CF273177
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|22491127|gb|BU051050.1|BU051050
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|4610183|gb|AI601022.1|AI601022
EST:     TCCAG-CCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5525873|gb|AI861766.1|AI861766
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|87151932|gb|DY396721.1|DY396721
EST:     TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 197

GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGATATGTCATCCTCCCCAAGGACTTTGAAAAGGGCTACCGAACCAACGTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 164

GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGATATGTCATCCTCCCCAAGGACTTTGAAAAGGGCTACCGAACCAACGTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 223

GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGATATGTCATCCTCCCCAAGGACTTTGAAAAGGGCTACCGAACCAACGTGA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 115

GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctct ... gcttttacagATTGCTGCTATCTGCCAAGAGGCTGGCATGCATGCTGTCCGCAAAAACCGATATGTCATCCTCCCCAAGGACTTTGAAAAGGGCTACCGAACCAACGTGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcttttcattctaacgttttaaattaataatacaaatacacttgaaattcatctactggaatacaatgttgcgtctgatgccacttccgccca

- - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttccgcc