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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggcttattttctcttaacaattttttttggccttgccgcgagccctacattttccgattcaatcaacctagctgacttagctcattgtgttgtag

Basic information

species Zea mays
transcript GRMZM2G090872_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090872_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g41710.1 (Oryza sativa), 5'ss of exon 5
GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggcttattttctct-taacaatt---ttttttggccttgccgcgag-----ccctacattttccgattcaatcaacctagc---tgacttagctcattgtgttgtag------------------------------------------------------------------------------------
||||||||||| ||||| |||||||||||||||| ||  ||   |||||  ||||   |   |||| ||| ||| |  | |      |||| | |      |   |  ||||||||     ||  |  | | |  |  | ||                                                                                     
GTTCTCTTCTCTGACATAAATGCTTATGAGgtaaatgaattggcttctccctaacggatacattttgtggtctttctcctaagtactccctccgtcccaaaaaaaaggcaacctagaaggggatgtgacccctcctagtataacgaatctgaaaggagggagtacgatgccttttttggtttttgttccagtcatctgaacgctcatggtattgcatgtacttgcag

upper sequence: GRMZM2G090872_T03 (Zea mays), 5'ss of exon 5
lower sequence: Vv15s0021g00830.t01 (Vitis vinifera), 5'ss of exon 6
GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggcttattttctcttaacaattttttttggccttgccgcgagccctacattttccgattcaatcaacctagctgacttagctcattgt-gttgtag---
||||| ||||||||||| |||||||||||||||| |  || | | | |   |  ||||   |||   | |   ||      ||   ||| | |  |  |   |  || |  |||  |  || |  |||       
GTTCTTTTCTCAGACATAAATGCTTATGAGgtaaata-ctgactctgt---agaaattaagtttattcatatagcacttaatatgatttactagcct-ttttcaaaggtacctttacaaatggaagttcctatcc