Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATAGCTTAAGTGTCATGCATCCAGAAGCCAACAGATCTGTTGCGCCGGTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacctaagaccaacgtcacatactctacaccagttatattttcagcgtattacctatatgccagtaacctatattactaacccatacataccgat...

Basic information

species Zea mays
transcript GRMZM2G090747_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090747_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g58740.1 (Oryza sativa), 5'ss of exon 5
AGGATAGCTTAAGTGTCATGCATCCAGAAGCCAACAGATCTGTTGCGCCGGTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacctaagaccaacgtcacatactctacaccagttatattttcagcgtatt-acctatatgccagtaacctatattactaacccatacataccgat
||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| || |||||  | |  ||| |||||| |||||||| |  |          |   |||       ||  |  | |||||| | |||| |     | |  |   | | |  || |       | | ||  || 
AGGATAGCTTAAGCGTAATGCATCCTGAAGCCAACAGATCTGTTGCACCGGTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAGgttagtatgttctttttggatgttatatcaatatcccatacttttttcaacatatttaaacccacgtgaccgagcaaagttccct-ttagtccttattgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5847560|gb|AW000639.1|AW000639
EST:     CCGATCCTAAAAGCCCTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: CCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|211096517|gb|FL457297.1|FL457297
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|211058312|gb|FL097919.1|FL097919
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|211121221|gb|FL444218.1|FL444218
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|37361394|gb|CF602683.1|CF602683
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|5714325|gb|AI944310.1|AI944310
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGA
EST: gi|6056579|gb|AW090984.1|AW090984
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|88749792|gb|DY533933.1|DY533933
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTTTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|84908391|gb|DW404269.1|DW404269
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|5739676|gb|AI947471.1|AI947471
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|148950390|gb|EC895955.2|EC895955
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|6020615|gb|AW065648.1|AW065648
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|67026682|gb|CO455431.1|CO455431
EST:     GTTGAGATGTGCCCGATCCTANA-GCACTACATANGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTANTA-GAGATGAGACNATGT
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTA-TAAGAGATGAGACAATGT
EST: gi|9953299|gb|BE639882.1|BE639882
EST:     GTTGAGATGTGCCCGATCCTAAAAGCCCTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|60396115|gb|DN228984.1|DN228984
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|71445293|gb|DR826343.1|DR826343
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGTTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|149111430|gb|EE294933.2|EE294933
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTTTGATCACGAG                         GGACCGTCCTGCTGATTCGATTTTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|5268853|gb|AI770817.1|AI770817
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|91878499|gb|EB408456.1|EB408456
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|5819252|gb|AI987458.1|AI987458
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|148964160|gb|EE015327.2|EE015327
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|211058311|gb|FL097918.1|FL097918
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|44901413|gb|CK827958.1|CK827958
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|84908450|gb|DW404328.1|DW404328
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|211058310|gb|FL097917.1|FL097917
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|32931103|gb|CF035915.1|CF035915
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|6020445|gb|AW065373.1|AW065373
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|5525818|gb|AI861711.1|AI861711
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|71320116|gb|DR796811.1|DR796811
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|211058313|gb|FL097920.1|FL097920
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|6056476|gb|AW090866.1|AW090866
EST:     TTGAGATGTGCCNCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAA
genomic: TTGAGATGTGCC-CGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAA
EST: gi|8665479|gb|BE186295.1|BE186295
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|166639513|gb|EG249287.1|EG249287
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAG
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAG
EST: gi|5714311|gb|AI944296.1|AI944296
EST:     GTTGAGATGTGCCCGATCCTAAAAGCCCTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGAT
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGAT
EST: gi|86474540|gb|DY240910.1|DY240910
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|9461511|gb|BE453769.1|BE453769
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|71772034|gb|DR969971.1|DR969971
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|6828044|gb|AW331687.1|AW331687
EST:     GTTGAGATGTGCCCGATCCTAAAAGCCCTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|6020606|gb|AW065639.1|AW065639
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|60397836|gb|DN230652.1|DN230652
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|78106933|gb|DV525351.1|DV525351
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|5901384|gb|AW042484.1|AW042484
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|60353492|gb|DN220465.1|DN220465
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|5525509|gb|AI861402.1|AI861402
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
EST: gi|211058314|gb|FL097921.1|FL097921
EST:     GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCATGAG                         GGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA
genomic: GTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 319

AGGATAGCTTAAGTGTCATGCATCCAGAAGCCAACAGATCTGTTGCGCCGGTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTATGATCCACGCGAAAGAATTGAGATGGCACAAGGCCATTCACTCTACCGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 92

AGGATAGCTTAAGTGTCATGCATCCAGAAGCCAACAGATCTGTTGCGCCGGTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTATGATCCACGCGAAAGAATTGAGATGGCACAAGGCCATTCACTCTACCGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 158

AGGATAGCTTAAGTGTCATGCATCCAGAAGCCAACAGATCTGTTGCGCCGGTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTATGATCCACGCGAAAGAATTGAGATGGCACAAGGCCATTCACTCTACCGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 250

AGGATAGCTTAAGTGTCATGCATCCAGAAGCCAACAGATCTGTTGCGCCGGTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacct ... atgtgcacagGGACCGTCCTGCTGATTCGATTCTTCAGGCTATAAGAGATGAGACAATGTATGATCCACGCGAAAGAATTGAGATGGCACAAGGCCATTCACTCTACCGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGATAGCTTAAGTGTCATGCATCCAGAAGCCAACAGATCTGTTGCGCCGGTTGAGATGTGCCCGATCCTAAAAGCACTACATAGGATTCTGATCACGAGgttagaacctaagaccaacgtcacatactctacaccagttatattttcagcgtattacctatatgccagtaacctatattactaacccatacataccgat

- - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG