1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TAGAGTAACTGGTGTTAAATCTAATGGTACAAAGAATTTCATTGTTGTTGATGGCAGCATGGCAGAACTCATCAGACCTAGCCTGTATGGAGCATATCAGgtttgtttagagatttaatcaatgataatgaattaatgactgttactactatgttcttgtggtagcttcttttccatctctagaaccataatgattccaa...
species | Zea mays |
transcript | GRMZM2G090722_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGGCAGCATGGCAGAACTCATCAGACC-AGCCTGTATGGAGCATATCAG CATATCGAATTGGTCTCTCCCCCCACTCCTGG-GCTGAAGTAGCGACCTTCEST: gi|22819576|gb|BU499666.1|BU499666
genomic: ATGGCAGCATGGCAGAACTCATCAGACCTAGCCTGTATGGAGCATATCAGgtttgtttag ... catgtggcagCATATCGAATTGGTCTCTCCCCCCACTCCTGGTGCTGAAGTAGCGACCTTC
EST: ATGGCAGCATGGCAGAACTCATCAGACCTAGCCTGTATGGAGCATATCAG CATATCGAATTGGTCTCTCCCCCCACTCCTGGTGCTGAAGTAGCGACCTTCEST: gi|21088912|gb|BQ401225.1|BQ401225
genomic: ATGGCAGCATGGCAGAACTCATCAGACCTAGCCTGTATGGAGCATATCAGgtttgtttag ... catgtggcagCATATCGAATTGGTCTCTCCCCCCACTCCTGGTGCTGAAGTAGCGACCTTC
EST: GCCTGTATGGAGCATATCAG CATATCGAATTGGTCTCTCCCCCCACTCCTGAG-GCTGAAGTAGCGACCTTEST: gi|87155442|gb|DY400231.1|DY400231
genomic: GCCTGTATGGAGCATATCAGgtttgtttag ... catgtggcagCATATCGAATTGGTCTCTCCCCCCACTCCTG-GTGCTGAAGTAGCGACCTT
EST: ATGGCAGCATGGCAGAACTCATCAGACCTAGCCTGTATGGAGCATATCAG CATATCGAATTGGTCTCTCCCCCCACTCCTGGTGCTGAAGTAGCGACCTTCEST: gi|26457140|gb|CA828723.1|CA828723
genomic: ATGGCAGCATGGCAGAACTCATCAGACCTAGCCTGTATGGAGCATATCAGgtttgtttag ... catgtggcagCATATCGAATTGGTCTCTCCCCCCACTCCTGGTGCTGAAGTAGCGACCTTC
EST: ATGGCAGCATGGCAGAACTCATCAGACCTAGCCTGTATGGAGCATATCAG CATATCGAATTGGTCTCTCCCCCCACTCCTGNG-GCTGAAGTAGCGACCTT
genomic: ATGGCAGCATGGCAGAACTCATCAGACCTAGCCTGTATGGAGCATATCAGgtttgtttag ... catgtggcagCATATCGAATTGGTCTCTCCCCCCACTCCTG-GTGCTGAAGTAGCGACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGAGTAACTGGTGTTAAATCTAATGGTACAAAGAATTTCATTGTTGTTGATGGCAGCATGGCAGAACTCATCAGACCTAGCCTGTATGGAGCATATCAGgtttgtttagagatttaatcaatgataatgaattaatgactgttactactatgttcttgtggtagcttcttttccatctctagaaccataatgattccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA