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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAGgtatgttcgtttccttccagtgccctttgattttggtaacagataaatattttctcttaatcacgttcgtagagcttcagatgtctttctgaacacatgt...

Basic information

species Zea mays
transcript GRMZM2G090647_T04
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5686889|gb|AI939803.1|AI939803
EST:     GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG                         ATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
genomic: GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAGgtatgttcgt ... tgtttctcagATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
EST: gi|166442029|gb|EG095433.1|EG095433
EST:     GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG                         ATATTCAAGGTTCC
genomic: GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAGgtatgttcgt ... tgtttctcagATATTCAAGGTTCC
EST: gi|71770109|gb|DR968046.1|DR968046
EST:     GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG                         ATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
genomic: GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAGgtatgttcgt ... tgtttctcagATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
EST: gi|8368443|gb|BE051388.1|BE051388
EST:     GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG                         ATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
genomic: GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAGgtatgttcgt ... tgtttctcagATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
EST: gi|30705964|gb|CD058985.1|CD058985
EST:     GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG                         ATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
genomic: GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAGgtatgttcgt ... tgtttctcagATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
EST: gi|76918843|gb|DV167481.1|DV167481
EST:     GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG                         ATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
genomic: GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAGgtatgttcgt ... tgtttctcagATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
EST: gi|5018209|gb|AI714402.1|AI714402
EST:     GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG                         ATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
genomic: GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAGgtatgttcgt ... tgtttctcagATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
EST: gi|211242536|gb|FL481660.1|FL481660
EST:     GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG                         ATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
genomic: GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAGgtatgttcgt ... tgtttctcagATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
EST: gi|211164192|gb|FL363087.1|FL363087
EST:     GAATGGGAATTAGCAGAGAACCTGCAAG-AGCTCTTGAGTACCAAACAAG                         ATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
genomic: GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAGgtatgttcgt ... tgtttctcagATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
EST: gi|60336843|gb|DN203816.1|DN203816
EST:     GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG                         ATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA
genomic: GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAGgtatgttcgt ... tgtttctcagATATTCAAGGTTCCAAGGTGTGGCTAACCTAACTCTGCATTTCTCTGACAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAGgtatgttcgtttccttccagtgccctttgattttggtaacagataaatattttctcttaatcacgttcgtagagcttcagatgtctttctgaacacatgt

- - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - -  GGAGCT