1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATCTATAGCTGGAGGAAGTGGGAAACCTTAGCAGGTCCAATTGCTGCTGAGGAATTGAAAGgtagggagggtcattcggtcatctgctggaagtggatgctttgtttggccatgttttatgcaaccctgttgatgtgtactacctcactgatctttgtctctctcag
species | Zea mays |
transcript | GRMZM2G089259_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGGAAGTGGGAAACCTTAGCAGGTCCAATTGCTGCTGAGGAATTGAAAG CTAGGAGAACCAAGGTGATGAGAAGGCAGTCNACCTTTGTTTTTAACAAEST: gi|71428557|gb|DR809607.1|DR809607
genomic: GAGGAAGTGGGAAACCTTAGCAGGTCCAATTGCTGCTGAGGAATTGAAAGgtagggaggg ... tctctctcagCTAGGAGAACCAAGGTGATGAGAAGGCAGTCAACCTTTGTTTTTAACAA
EST: GAGGAAGTGGGAAACCTTAGCAGGTCCAATTGCTGCTGAGGAATTGAAAG CTAGGAGAACCAAGGTGATGAGAAGGCAGTCAACCTTTGTTTTTAACAATGEST: gi|87157722|gb|DY402511.1|DY402511
genomic: GAGGAAGTGGGAAACCTTAGCAGGTCCAATTGCTGCTGAGGAATTGAAAGgtagggaggg ... tctctctcagCTAGGAGAACCAAGGTGATGAGAAGGCAGTCAACCTTTGTTTTTAACAATG
EST: GAGGAAGTGGGAAACCTTAGCAGGTCCAATTGCTGCTGAAGAATTGAAAG CTAGGAGAACCAAGGTGATEST: gi|76012907|gb|DT940077.1|DT940077
genomic: GAGGAAGTGGGAAACCTTAGCAGGTCCAATTGCTGCTGAGGAATTGAAAGgtagggaggg ... tctctctcagCTAGGAGAACCAAGGTGAT
EST: GAGGAAGTGGGAAACCTTAGCAGGTCCAATTGCTGCTGAGGAATTGAAAG CTAGGAGAACCAAGGTGATGAGAAGGCAGTCAACCTTTGTTTTTAACAATGEST: gi|60356662|gb|DN223635.1|DN223635
genomic: GAGGAAGTGGGAAACCTTAGCAGGTCCAATTGCTGCTGAGGAATTGAAAGgtagggaggg ... tctctctcagCTAGGAGAACCAAGGTGATGAGAAGGCAGTCAACCTTTGTTTTTAACAATG
EST: GAGGAAGTGGGAAACCTTAGCAGGTCCAATTGCTGCTGAGGAATTGAAAG CTAGGAGAACCAAGGTGATGAGAAGGCAGTCAACCTTTGTTTTTAACAATGEST: gi|148994788|gb|EE034233.2|EE034233
genomic: GAGGAAGTGGGAAACCTTAGCAGGTCCAATTGCTGCTGAGGAATTGAAAGgtagggaggg ... tctctctcagCTAGGAGAACCAAGGTGATGAGAAGGCAGTCAACCTTTGTTTTTAACAATG
EST: GAGGAAGTGGGAAACCTTAGCAGGTCCAATTGCTGCTGAGGAATTGAAAG CTAGGAGAACCAAGGTGATGAGAAAGCAGTCAACCTTTGTTTTTAACAATG
genomic: GAGGAAGTGGGAAACCTTAGCAGGTCCAATTGCTGCTGAGGAATTGAAAGgtagggaggg ... tctctctcagCTAGGAGAACCAAGGTGATGAGAAGGCAGTCAACCTTTGTTTTTAACAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTATAGCTGGAGGAAGTGGGAAACCTTAGCAGGTCCAATTGCTGCTGAGGAATTGAAAGgtagggagggtcattcggtcatctgctggaagtggatgctttgtttggccatgttttatgcaaccctgttgatgtgtactacctcactgatctttgtctctctcag
- - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - GCTGCT