1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGCCCAGTTGAATGAGCATGTTAAGCTCTCCATGCTGCGGAATGCCACCTGGACTTTGTCTAACTTCTGCAGGGGAAAACCACAGCCATCATTTGATCAGgttttaaacaagacttcttttaactgcttttctgtaactgtggtaactaactaaacatgtttatctttggctgttatag
species | Zea mays |
transcript | GRMZM2G088231_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGACTTTGTCTAACTTCTGCAGGGGAAAACCACAGCCATCATTTGATCAG ACTAAGCCTGCTCTGCCAGCACTTGCACGACTTATCCATTCCAACGACGAGEST: gi|149111962|gb|EE191122.2|EE191122
genomic: GGACTTTGTCTAACTTCTGCAGGGGAAAACCACAGCCATCATTTGATCAGgttttaaaca ... gctgttatagACTAAGCCTGCTCTGCCAGCACTTGCACGACTTATCCATTCCAACGACGAG
EST: GGACTTTGTCTAACTTCTGCAGGGGAAAACCACAGCCATCATTTGATCAG ACTAAGCCTGCTCTGCEST: gi|32915771|gb|CF020583.1|CF020583
genomic: GGACTTTGTCTAACTTCTGCAGGGGAAAACCACAGCCATCATTTGATCAGgttttaaaca ... gctgttatagACTAAGCCTGCTCTGC
EST: GGACTTTGTCTAACTTCTGCAGGGGAAAACCACAGCCATCATTTGATCAG ACTAAGCCTGCTCTGCCAGCACTTGCACGACTTATCCATTCCAACGACGAGEST: gi|18963326|gb|BM660372.1|BM660372
genomic: GGACTTTGTCTAACTTCTGCAGGGGAAAACCACAGCCATCATTTGATCAGgttttaaaca ... gctgttatagACTAAGCCTGCTCTGCCAGCACTTGCACGACTTATCCATTCCAACGACGAG
EST: GGACTTTGTCTAACTTCTGCAGGGGAAAACCACAGCCATCATTTGATCAG ACTAAGCCTGCTCTGCCAGCACTTGCACGACTTATTCATTCCAACGACGAG
genomic: GGACTTTGTCTAACTTCTGCAGGGGAAAACCACAGCCATCATTTGATCAGgttttaaaca ... gctgttatagACTAAGCCTGCTCTGCCAGCACTTGCACGACTTATCCATTCCAACGACGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCCAGTTGAATGAGCATGTTAAGCTCTCCATGCTGCGGAATGCCACCTGGACTTTGTCTAACTTCTGCAGGGGAAAACCACAGCCATCATTTGATCAGgttttaaacaagacttcttttaactgcttttctgtaactgtggtaactaactaaacatgtttatctttggctgttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG