Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATCATTCAGAAGGAGAACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccccacacctcaggctgtctggtttacaggtataggacactaagctgctgcttgcctaaattcaagtgttttggtatctgtctatctgatgatgacag

Basic information

species Zea mays
transcript GRMZM2G088212_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G088212_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os06g51150.1 (Oryza sativa), 5'ss of exon 6
TGCATCATTCAGAAGGAGAACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc-cacacctcaggctgtctggtttacaggtataggacactaagctgctgc-ttgcctaaattcaagtgttttggtatctgtctatctgatgatgacag
||  ||||| | ||||||||||| ||| | |||||||| |||||||| || || || |||||||| |||||||  |     ||  | |    || ||    |||  |  | ||   | |||  |  |  |   |||| |    | |||| |||| |  |                
TGTGTCATTGACAAGGAGAACAATTTCCAACAGGCTGGTGAGAGATACCGGTCATTTGACCCTGCCAGgtttgttcttgttcaatttaattcgtgtga---acacatcgaagagtttgagcaacaacgctaattaaacttt--tctttttgtatgtaacacag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355364|gb|CD439721.1|CD439721
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|51592848|gb|CV071994.1|CV071994
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|12968295|gb|BG265241.1|BG265241
EST:     CGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: CGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|6563780|gb|AW231312.1|AW231312
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|44901312|gb|CK827857.1|CK827857
EST:     GAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: GAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|213172790|gb|FM182986.1|FM182986
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGATCCTTTGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGANNCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|83278461|gb|DV942469.1|DV942469
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|211375390|gb|FK987875.1|FK987875
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|18176932|gb|BM378142.1|BM378142
EST:     TCGTTCCTTCGACCCTGC-AG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: TCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|4681224|gb|AI629894.1|AI629894
EST:     TCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: TCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|51592345|gb|CV071491.1|CV071491
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCNAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|5901194|gb|AW042294.1|AW042294
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|18176922|gb|BM378132.1|BM378132
EST:     CGACCCTGC-AG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: CGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|45567401|gb|CK985553.1|CK985553
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|6227062|gb|AW155766.1|AW155766
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|24768568|gb|CA403697.1|CA403697
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|60351292|gb|DN218265.1|DN218265
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|60348828|gb|DN215801.1|DN215801
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|37361365|gb|CF602654.1|CF602654
EST:     -ATAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|211021120|gb|FK987892.1|FK987892
EST:     GTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: GTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|60357381|gb|DN224354.1|DN224354
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|18176902|gb|BM378112.1|BM378112
EST:     GAGAGATATCGTTCCTTCGACCCTGC-AG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: GAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|5124253|gb|AI745989.1|AI745989
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|12973094|gb|BG268309.1|BG268309
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|6827986|gb|AW331629.1|AW331629
EST:     ANCAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGGCCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|24769943|gb|CA405072.1|CA405072
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|8930216|gb|BE224980.1|BE224980
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGATCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|31350569|gb|CD434926.1|CD434926
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|8366919|gb|BE049927.1|BE049927
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|211023555|gb|FK987912.1|FK987912
EST:     GTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: GTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|13237225|gb|BG355239.1|BG355239
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|83279341|gb|DV943349.1|DV943349
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|211480992|gb|FL462395.1|FL462395
EST:     TCGTTCCTTGGA-CCTTCAAA                         GCAAGACCCGG-TCATCCAGCGATGGGTTGACGCACTGACAGACCCTTGCG
genomic: TCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGA-CCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCG
EST: gi|16378441|gb|BI992446.1|BI992446
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|60342963|gb|DN209936.1|DN209936
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|38502557|gb|CF972417.1|CF972417
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|6828097|gb|AW331740.1|AW331740
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|6056908|gb|AW091313.1|AW091313
EST:     GTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: GTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|18176897|gb|BM378107.1|BM378107
EST:     GAGATATCGTTCCTTCGACCCTGC-AG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: GAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
EST: gi|38502631|gb|CF972491.1|CF972491
EST:     AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAG                         GCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT
genomic: AACAACTTCAAGCAGGCTGGCGAGAGATATCGTTCCTTCGACCCTGCAAGgtttgccccc ... atgatgacagGCAAGACCGGTTCATCCAGCGATGGGTTGACGCACTGACAGACCCTCGCGT