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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTTAGAATTGCATGCACAGTTGCTCAAATGGAACGCGAAGGGGGCATCAGTCCTCGAATGTCCCCTTTAGCGCAAgtatggctattttgtgttctgaattttgctaaaagtatttgtaattttgtatgtactcccctttacatatttattatgccacttcatggtaaagttacta...

Basic information

species Zea mays
transcript GRMZM2G087692_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G087692_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os12g10200.1 (Oryza sativa), 5'ss of exon 5
GGAGCTTAGAATTGCATGCACAGTTGCTCAAATGGAACGCGAAGGGGGCATCAGTCCTCGAATGTCCCCTTTAGCGCAAgtatggctattttgtgttctgaattttg-ctaaaagtatttgtaattttgtatgtactcccctttacatatttattatgccacttcatggtaaagttacta----
||| || ||||| || || ||| ||||||||||||| || || || ||||||||||| |||||||| |||||||| |||||| |  |  | || | |||||| |||| |   ||     | | |||||||   |  | | | ||     |||||     || ||  |   ||    | |     
GGAACTAAGAATAGCTTGTACAATTGCTCAAATGGAGCGTGAGGGTGGCATCAGTCCCCGAATGTCACCTTTAGCACAAgtaagattcctgtgcgatctgaagtttgaccccaacaggatattattttgtgcttcgtacacctt-----tttatggcatcagtttctcagaagcacattcctgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78078319|gb|DV506734.1|DV506734
EST:     AAATGGAACGCGAAGGGGGCATCAGTCCTCGAATGTCCCCTTTAGCGCAA                         GTCCGTGACGCANGAAACCTTTTGACAAGGGCAGGCTTTACCCTTCCAGGA
genomic: AAATGGAACGCGAAGGGGGCATCAGTCCTCGAATGTCCCCTTTAGCGCAAgtatggctat ... acttttcaagGTCCGTGACGCAGGAAACCTTTTGACAAGGGCAGGCTTTACCCTTCCAGGA
EST: gi|50328095|gb|CO523221.1|CO523221
EST:     AAATGGAACGCGAAGGGGGCATCAGTCCTCGAATGTCCCCTTTAGCGCAA                         GTCCGTGACGCAGGAAACCTTTTGACAAGGGCAGGCTTTACCCT
genomic: AAATGGAACGCGAAGGGGGCATCAGTCCTCGAATGTCCCCTTTAGCGCAAgtatggctat ... acttttcaagGTCCGTGACGCAGGAAACCTTTTGACAAGGGCAGGCTTTACCCT
EST: gi|93282992|gb|EB675256.1|EB675256
EST:     AAATGGAACGCGAAGGGGGCATCAGTCCTCGAATGTCCCCTTTAGCGCAA                         GTCCGTGACGCAGGAAACCTTTTGACAAGGGCAGGCTTTACCCTTCCAGGA
genomic: AAATGGAACGCGAAGGGGGCATCAGTCCTCGAATGTCCCCTTTAGCGCAAgtatggctat ... acttttcaagGTCCGTGACGCAGGAAACCTTTTGACAAGGGCAGGCTTTACCCTTCCAGGA