1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAAACGAGACCCTTCCTTTGCAAGCAAGGTGAATAAAATAGTTGTACTGGGTGGAGCTTTCTTCGTGGCTGGAAATGTCAACCCTGCTGCTGAAGCAAATgtatgttagcacactgcattatacctgagaaggctaatacttcgacataagtagtgaaccttgagtgcattactctgcag
species | Zea mays |
transcript | GRMZM2G085960_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGGAGCTTTCTTCGTGGCTGGAAATGTCAACCCTGCTGCTGAAGCAAAT ATTCTTGGAGACCCAGAAGCAGCTGACATAGTTTTTACTTCAGGAGCAGATEST: gi|71448364|gb|DR829414.1|DR829414
genomic: GTGGAGCTTTCTTCGTGGCTGGAAATGTCAACCCTGCTGCTGAAGCAAATgtatgttagc ... tactctgcagATTCTTGGAGACCCAGAAGCAGCTGACATAGTTTTTACTTCAGGAGCAGAT
EST: GTGGAGCTTTCTTCGTGGCTGGAAATGTCAACCCTGCTGCTGAAGCAAAT ATTCTTGGAGACCCAGAAGCAGCTGACATAGTTTTTACTTCAGGAGCAGATEST: gi|74238611|gb|DT646525.1|DT646525
genomic: GTGGAGCTTTCTTCGTGGCTGGAAATGTCAACCCTGCTGCTGAAGCAAATgtatgttagc ... tactctgcagATTCTTGGAGACCCAGAAGCAGCTGACATAGTTTTTACTTCAGGAGCAGAT
EST: GTGGAGCTTTCTTCGTGGCTGGAAATGTCAACCCTGCTGCTGAAGCAAAT ATTCTTGGAGACCCAGAAGCAGCTGEST: gi|149058761|gb|EE156779.2|EE156779
genomic: GTGGAGCTTTCTTCGTGGCTGGAAATGTCAACCCTGCTGCTGAAGCAAATgtatgttagc ... tactctgcagATTCTTGGAGACCCAGAAGCAGCTG
EST: GTGGAGCTTTCTTCGTGGCTGGAAATGTCAACCCTGCTGCTGAAGCAAAT ATTCTTGGAGACCCAGAAGCAGCTGACATAGTTTTTACTTCAGGAGCAGATEST: gi|71432393|gb|DR813443.1|DR813443
genomic: GTGGAGCTTTCTTCGTGGCTGGAAATGTCAACCCTGCTGCTGAAGCAAATgtatgttagc ... tactctgcagATTCTTGGAGACCCAGAAGCAGCTGACATAGTTTTTACTTCAGGAGCAGAT
EST: GTGGAGCTTTCTTCGTGGCTGGAAATGTCAACCCTGCTGCTGAAGCAAAT ATTCTTGGAGACCCAGAAGCAGCTGACATAGTTTTTACTTCAGGAGCAGATEST: gi|78104295|gb|DV522713.1|DV522713
genomic: GTGGAGCTTTCTTCGTGGCTGGAAATGTCAACCCTGCTGCTGAAGCAAATgtatgttagc ... tactctgcagATTCTTGGAGACCCAGAAGCAGCTGACATAGTTTTTACTTCAGGAGCAGAT
EST: GTGGAGCTTTCTTCGTGGCTGGAAATGTCAACCCTGCTGCTGAAGCAAAT ATTCTTGGAGACCCAGAAGCAGCTGACATAGTTTTTACTTCAGGAGCAGAT
genomic: GTGGAGCTTTCTTCGTGGCTGGAAATGTCAACCCTGCTGCTGAAGCAAATgtatgttagc ... tactctgcagATTCTTGGAGACCCAGAAGCAGCTGACATAGTTTTTACTTCAGGAGCAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAACGAGACCCTTCCTTTGCAAGCAAGGTGAATAAAATAGTTGTACTGGGTGGAGCTTTCTTCGTGGCTGGAAATGTCAACCCTGCTGCTGAAGCAAATgtatgttagcacactgcattatacctgagaaggctaatacttcgacataagtagtgaaccttgagtgcattactctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA