1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TCGCATTCTAGGCTTAGGTGACCTTGGTGTTCAGGGCATAGGTATACCTATTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAGgtatggaacatcctgataactgtctgaaacgacatcagttacttataaattacttttatgtttactttatagaacatagcgaactaggaaccagttttattcaatatagcctgctgtttatggcatacctttttcatatttttctgctctctgagaatacatttgtgcttgcag
species | Zea mays |
transcript | GRMZM2G085747_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAG GTTCTTCCAATAATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAGEST: gi|74238358|gb|DT646272.1|DT646272
genomic: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAGgtatggaaca ... gtgcttgcagGTTCTTCCAATAATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAG
EST: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAG GTTCTTCCAATAATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAGEST: gi|211384290|gb|FL369291.1|FL369291
genomic: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAGgtatggaaca ... gtgcttgcagGTTCTTCCAATAATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAG
EST: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATAAACC-ACAGAAG GGTCT-CCAATAATGCTTGATG-GGGAEST: gi|33094812|gb|CF054806.1|CF054806
genomic: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAGgtatggaaca ... gtgcttgcagGTTCTTCCAATAATGCTTGATGTGGGA
EST: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAG GTTCTTCCAATAATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAGEST: gi|32838032|gb|CD977710.1|CD977710
genomic: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAGgtatggaaca ... gtgcttgcagGTTCTTCCAATAATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAG
EST: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAG GTTCTTCCAATAATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAGEST: gi|32836374|gb|CD976052.1|CD976052
genomic: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAGgtatggaaca ... gtgcttgcagGTTCTTCCAATAATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAG
EST: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAG GTTCTTCCAATAATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAGEST: gi|211016654|gb|FL375789.1|FL375789
genomic: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAGgtatggaaca ... gtgcttgcagGTTCTTCCAATAATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAG
EST: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAG GTGCT-CCAATAATGCGTGATGTGGGAAACAA-TAATGAAA-GCTTCTGGAEST: gi|71437509|gb|DR818559.1|DR818559
genomic: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAGgtatggaaca ... gtgcttgcagGTTCTTCCAATAATGCTTGATGTGGGAA-CAAATAATGAAAAGCTTCTGGA
EST: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAG GTTCTTCCAATAATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAG
genomic: TTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAGgtatggaaca ... gtgcttgcagGTTCTTCCAATAATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCATTCTAGGCTTAGGTGACCTTGGTGTTCAGGGCATAGGTATACCTATTGGTAAACTGGATGTTTATGTTGCAGCTGCTGGTATTAACCCACAGAAGgtatggaacatcctgataactgtctgaaacgacatcagttacttataaattacttttatgtttactttatagaacatagcgaactaggaaccagttttattcaatatagcctgctgtttatggcatacctttttcatatttttctgctctctgagaatacatttgtgcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT