Sequence
atgc intronic sequence ATGC exonic sequenceGTAGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAACATTGAGGCAGCTgtaagttcacctaccaatttattttatactgattttgtttactggacctctacttatgggctgctacaatatcaaatacttcatgtctgtgtcatgttgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 3
GTAGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAACATTGAGGCAGCTgtaagttcacctaccaatttattttatactgattttgtttactggacctc-tacttatgggctgctacaatatcaaatacttcatgtctgtgtcatgttgt--
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GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcacttaacatttg---ctatggaaattgagaactctgttcctcctgggccttggtgtatatggcattttatctgtcacggagggatgggggaagag
upper sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA15G04470.1 (Glycine max), 5'ss of exon 5
GTAGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAACATTGAGGCAGCTgtaagttcacctaccaatttattttatactgattttgtttactggacctctacttatgggctgctacaatatcaaatactt-catgtctgtgtcatgttgt-----
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GTAGAGAGTATAGTATTAAGTATCATATCGATGCTTTCTAGTCCTAATGATGAATCTCCAGCAAATGTTGAAGCTGCGgtaagtttg---accattttgtg--attct-attttatttctgcaacctttccctcagtcctatcttatggctacttatttgcatcccagagaagaaaaggtaaac
upper sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 5
lower sequence: AT5G59300.1 (Arabidopsis thaliana), 5'ss of exon 5
GTAGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAACATTGAGGCAGCTgtaagttcacctaccaatttattttatactgattttgtttactgg--acctctacttatgggctgc-tacaatatcaaatacttcatgtctgtgtcatgttgt
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GTTGAGAGTATTATGTTGAGTATCATATCAATGCTTTCTGGTCCTAACGATGAGTCTCCAGCAAATGTTGAAGCTGCCgtgagtatttcaatcgatttatcgcacatagcttgcaattaagagcagaacatgcttatggattttgtgtgttttctcttgcgcag-----------------
upper sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 5
lower sequence: AT3G46460.1 (Arabidopsis thaliana), 5'ss of exon 5
GTAGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAACATTGAGGCAGCTgtaagt-tcacctaccaatttattttatactgattttgtttactggacctct----acttatgggctgctacaatatcaaatacttcatgtctgtg--tcatgttgt-----------------
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GTTGAGAGTATCATGTTGAGTATTATATCAATGCTCTCTGGTCCCAACGACGAATCTCCAGCAAACGTTGAGGCTGCTgtgagtgttttctattgattagctatgaactcatcagattaacactgtctcattggatttacatatagtttatgtaccagagcttgctcgttaaccattctccttgtggggtttcctcttgcag
upper sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 5
lower sequence: Vv08s0007g00120.t01 (Vitis vinifera), 5'ss of exon 5
GTAGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAACATTGAGGCAGCTgtaagttcacctaccaat--ttattttatactgattttgtttactggacctctacttatgggctgctacaatatcaaatacttcatgtctgtgtcatgttgt
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GTTGAAAGCATAGTTTTGAGTATCATATCAATGCTTTCAAGTCCAAATGATGAATCTCCTGCAAATATTGAAGCTGCTgtaagttaaattctgactcgttacctcatctagtattagtttggggattccattcttcttattaacattaatctaacattaattttgctctccacatgta--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74240335|gb|DT648249.1|DT648249EST: CAATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAACATTGAGGCAGCT GAGGCACTAGCATCCTATATTTCAGCTCGTGAAGCCTCCGCATATATCTGT
genomic: CAATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAACATTGAGGCAGCTgtaagttcac ... gtctgcacagGAGGCACTAGCATCCTATATTTCAGCTCGTGAAGCCTCCGCATATATCTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAACATTGAGGCAGCTgtaagttcacctaccaatttattttatactgattttgtttactggacctctacttatgggctgctacaatatcaaatacttcatgtctgtgtcatgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT