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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTTGGGGCAGTCAATGGGAGGTGCAGTTGCCCTGAAAGTACACTTGAAGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctcaaactcccaattaccatcagattacgtcatcacacaatcacatccttttggttgtgttagtataaggtgtgtatatgtttcactgtccact...

Basic information

species Zea mays
transcript GRMZM2G085438_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085438_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g49380.1 (Oryza sativa), 5'ss of exon 5
TCTCTTGGGGCAGTCAATGGGAGGTGCAGTTGCCCTGAAAGTACACTTGAAGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctcaaactcccaattaccatcagattacgtcatcacacaatcacatccttttggttgtgttagtataaggtgtgtatatgtttcactgtccact-----
||| ||||| || ||||||||||||||||| ||  ||||||||||| |||| |||| | ||||||||||||| ||||||||||| ||||||||||||||||||    |  ||     ||  |   |||    |  |  | |  | || ||||  || | ||| ||   || | || |||  ||||  | || ||| ||||     
TCTATTGGGACAATCAATGGGAGGTGCAGTGGCTTTGAAAGTACACCTGAAACAACCAAAAGAATGGGATGGAGTGCTTCTTGTTGCACCTATGTGCAAGgtaaggttagaatctagaaaaaggttcaccaaatctagtgat-ctataacatttttattgttttg--ggtgttagttgt--atattgtccaatgttcactttcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71426297|gb|DR807347.1|DR807347
EST:     AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAG                         GGCAACTAACCTGAAGAATGCATGAAGAAATTTGGGAGCCACTGGTCAAGA
genomic: AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ttcatggtagGGCAACTAACCTGAAGAATGCATGAAGAAATTTGGGAGCCACTGGTCAAGA