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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTTGGGGCAGTCAATGGGAGGTGCAGTTGCCCTGAAAGTACACTTGAAGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctcaaactcccaattaccatcagattacgtcatcacacaatcacatccttttggttgtgttagtataaggtgtgtatatgtttcactgtccact...

Basic information

species Zea mays
transcript GRMZM2G085438_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085438_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g49380.1 (Oryza sativa), 5'ss of exon 5
TCTCTTGGGGCAGTCAATGGGAGGTGCAGTTGCCCTGAAAGTACACTTGAAGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctcaaactcccaattaccatcagattacgtcatcacacaatcacatccttttggttgtgttagtataaggtgtgtatatgtttcactgtccact-----
||| ||||| || ||||||||||||||||| ||  ||||||||||| |||| |||| | ||||||||||||| ||||||||||| ||||||||||||||||||    |  ||     ||  |   |||    |  |  | |  | || ||||  || | ||| ||   || | || |||  ||||  | || ||| ||||     
TCTATTGGGACAATCAATGGGAGGTGCAGTGGCTTTGAAAGTACACCTGAAACAACCAAAAGAATGGGATGGAGTGCTTCTTGTTGCACCTATGTGCAAGgtaaggttagaatctagaaaaaggttcaccaaatctagtgat-ctataacatttttattgttttg--ggtgttagttgt--atattgtccaatgttcactttcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37375743|gb|CF624330.1|CF624330
EST:     CTTCTTGTCGCACCTATGTGCAAG                         ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
genomic: CTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
EST: gi|71759858|gb|DR957795.1|DR957795
EST:     GGATGGGTGTGCTTCTTGTCGCACCTATGTGCAAG                         ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
genomic: GGAT-GGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
EST: gi|78106711|gb|DV525129.1|DV525129
EST:     GCAACAAACA-GAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAG                         ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGA
genomic: GCAACAA-CAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGA
EST: gi|88752776|gb|DY536917.1|DY536917
EST:     AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAG                         ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
genomic: AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
EST: gi|78123598|gb|DV541982.1|DV541982
EST:     AGCAACAACAAGAAGGGGATGGGGTGCTTCTTGTCGCACCTATGTGCAAG                         ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
genomic: AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
EST: gi|71439067|gb|DR820117.1|DR820117
EST:     AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAG                         ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
genomic: AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
EST: gi|78076592|gb|DV505026.1|DV505026
EST:     AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAG                         ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
genomic: AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
EST: gi|40333901|gb|CK367971.1|CK367971
EST:     GGTGTGCTTCTTGTCGCACCTATGTGCAAG                         ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
genomic: GGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
EST: gi|31354329|gb|CD438686.1|CD438686
EST:     AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAG                         ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
genomic: AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA