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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGACTATTGGCTACATTAGATTCCTCCTGAGTCAAATCGAGgtccttctcaaaaatccgatctattaatatatactgtatttcttttcctcgcgatatctatctttctcttgtaaatccagacacacatgtgggcacattc...

Basic information

species Zea mays
transcript GRMZM2G083749_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083749_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g13000.1 (Oryza sativa), 5'ss of exon 5
------------------------GAGACTATTGGCTACATTAGATTCCTCCTGAGTCAAATCGAGgtccttctcaaaaatccgatcta-ttaatatatactgtatttcttttcctcgcgatatctatctttctcttgtaaatccagacacacatgtgggcacattc----
                        ||||| ||||| |||||||||||||||||| ||||||| |||||||  | |       |   ||   ||||  ||     | | | ||||      || || |||  | |    || |   ||| | |  | |    |  |||    
ACTGACACTGCATCCGTACTGCAAGAGACCATTGGTTACATTAGATTCCTCCTGGGTCAAATTGAGgtccaaccccttctctcaccctggctaatcaattagccactccatttct--atcatttccatccatat---atatacatagagagagttctaattaacttcagag