1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGgtatgtctttatagtattgcactatagtgtccagagtggtcaatatgactcgatgggttttgttctgatagccag
species | Zea mays |
transcript | GRMZM2G083580_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG CCAGGGTCAAAAGGTGGTGTTAAAGCCGTGATTCTTTGCCCAACAAGGGAAEST: gi|88753711|gb|DY537852.1|DY537852
genomic: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGgtatgtcttt ... tgatagccagG-A---TCAAAAGGTGGTGTTAAAGCCGTGATTCTTTGCCCAACAAGGGAA
EST: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG CEST: gi|88753711|gb|DY537852.1|DY537852
genomic: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGgtatgtcttt ... tgatagccag-
EST: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG CEST: gi|88753711|gb|DY537852.1|DY537852
genomic: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGgtatgtcttt ... tgatagccag-
EST: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG CEST: gi|88753711|gb|DY537852.1|DY537852
genomic: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGgtatgtcttt ... tgatagccag-
EST: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG CEST: gi|71299629|gb|DR785823.1|DR785823
genomic: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGgtatgtcttt ... tgatagccag-
EST: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG CEST: gi|71299629|gb|DR785823.1|DR785823
genomic: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGgtatgtcttt ... tgatagccag-
EST: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG CEST: gi|71299629|gb|DR785823.1|DR785823
genomic: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGgtatgtcttt ... tgatagccag-
EST: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG CEST: gi|71299629|gb|DR785823.1|DR785823
genomic: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGgtatgtcttt ... tgatagccag-
EST: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG CEST: gi|20300147|gb|BQ163090.1|BQ163090
genomic: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGgtatgtcttt ... tgatagccag-
EST: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG GGTCAAAAGGTGGTGTTAAAGCCGTGATTCTTTGCCCAACAAGGGAATTGGEST: gi|87151950|gb|DY396739.1|DY396739
genomic: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGgtatgtcttt ... tgatagccagGATCAAAAGGTGGTGTTAAAGCCGTGATTCTTTGCCCAACAAGGGAATTGG
EST: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG GGTCAAAAGGTGGTGTTAAAGCCGTGATTCTTTGCCCAACAAGGGAATTGGEST: gi|211460875|gb|FL473429.1|FL473429
genomic: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGgtatgtcttt ... tgatagccagGATCAAAAGGTGGTGTTAAAGCCGTGATTCTTTGCCCAACAAGGGAATTGG
EST: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGCCAGEST: gi|18964336|gb|BM660947.1|BM660947
genomic: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATT-A---AGgtatgtcttt ... tgatagc
EST: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG CCAGGGTCAAAAGGTGGTGTTAAAGCCGTGATTCTTTGCCCAACAAGGGAAEST: gi|78115306|gb|DV533694.1|DV533694
genomic: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGgtatgtcttt ... tgatagccagG-A---TCAAAAGGTGGTGTTAAAGCCGTGATTCTTTGCCCAACAAGGGAA
EST: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGCCAGEST: gi|18661856|gb|BM501616.1|BM501616
genomic: GTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATT-A---AGgtatgtcttt ... tgatagc
EST: CTGGC-AGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG GGTCAAAAGGTGGTGTTAAAGCCGTGATTCTTTGCCCAAC-AGGGAATTGG
genomic: CTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGgtatgtcttt ... tgatagccagGATCAAAAGGTGGTGTTAAAGCCGTGATTCTTTGCCCAACAAGGGAATTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAGgtatgtctttatagtattgcactatagtgtccagagtggtcaatatgactcgatgggttttgttctgatagccag
- - - - - - - - - - - - - - - - - - GCAAGA