1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGAACAGTGTTGATCCATTCCGCTGAGCAGgtatgttcttactcttgagaattttttcgagttccgttgaagttgttcctacttttaatatgctcgtgataggtttaggtgttgcaaactatttagttgg...
species | Zea mays |
transcript | GRMZM2G083095_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCTCAGCAACCGAAACAAAGGGAACAGTGTTGATCCATTCCGCTGAGCAG CTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAAEST: gi|24773918|gb|CA409172.1|CA409172
genomic: CCTCAGCAACCGAAACAAAGGGAACAGTGTTGATCCATTCCGCTGAGCAGgtatgttctt ... gcttttgcagCTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAA
EST: TTCCGCTGAGCAG CTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAAEST: gi|211512562|gb|FL110023.1|FL110023
genomic: TTCCGCTGAGCAGgtatgttctt ... gcttttgcagCTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAA
EST: CCTCAGCAACCGAAACAAAGGGAACAGTGTTGATCCATTCCGCTGAGCAG CTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAAEST: gi|60358557|gb|DN225530.1|DN225530
genomic: CCTCAGCAACCGAAACAAAGGGAACAGTGTTGATCCATTCCGCTGAGCAGgtatgttctt ... gcttttgcagCTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAA
EST: CCTCAGCAACCGAAACAAAGGGAACAGTGTTGATCCATTCCGCTGAGCAG CTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAA
genomic: CCTCAGCAACCGAAACAAAGGGAACAGTGTTGATCCATTCCGCTGAGCAGgtatgttctt ... gcttttgcagCTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGAACAGTGTTGATCCATTCCGCTGAGCAGgtatgttcttactcttgagaattttttcgagttccgttgaagttgttcctacttttaatatgctcgtgataggtttaggtgttgcaaactatttagttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG