1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCACAATGCTGCTCTTACTGCACAACCAGCTTTGGTGCAGGATGAGAGGAAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttgtggaatcttcttttctaatgtcacctccattttctttttctttgacatgttatttgtctttattttcag
species | Zea mays |
transcript | GRMZM2G083076_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGACEST: gi|60342361|gb|DN209334.1|DN209334
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttg ... ttattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGACEST: gi|78180907|gb|DV551280.1|DV551280
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttg ... ttattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGACEST: gi|211163793|gb|FL451880.1|FL451880
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttg ... ttattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGACEST: gi|149111477|gb|EE294981.2|EE294981
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttg ... ttattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGAC
EST: AAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGACEST: gi|148943272|gb|EC888334.2|EC888334
genomic: AAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttg ... ttattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAT TCGGCCATCTGAAGATAGAACTTTTCCATTAAGTGTTATTGTTGAGCAGACEST: gi|78103809|gb|DV522237.1|DV522237
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttg ... ttattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGACEST: gi|60672250|gb|DN475016.1|DN475016
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttg ... ttattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGAC
EST: AAGCTGCTTGAGAGAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGGAGATAGGACTATTCCATTAAGTGTTATTGCTGAGCAGACEST: gi|110942146|gb|EE162303.1|EE162303
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttg ... ttattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGAC
EST: AAGCTGCTGGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGACEST: gi|12047287|gb|BF729426.1|BF729426
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttg ... ttattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGACEST: gi|8401231|gb|BE056865.1|BE056865
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttg ... ttattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGACEST: gi|71325796|gb|DR799577.1|DR799577
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttg ... ttattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGACEST: gi|211050666|gb|FL481059.1|FL481059
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttg ... ttattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGAC
EST: AATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAMCTATTCCATTAAGTGTTATTGCTGAGCAGACEST: gi|116829258|gb|EC866181.1|EC866181
genomic: AATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttg ... ttattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGAC
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttg ... ttattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCACAATGCTGCTCTTACTGCACAACCAGCTTTGGTGCAGGATGAGAGGAAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacatttgtggaatcttcttttctaatgtcacctccattttctttttctttgacatgttatttgtctttattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT