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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGGTGTTGGTGTTGCAACTATAACTGATCTGCAACTCAACCTTGTGGGATCTGTATTGTCCCTACTGGCAATCATCACAACCTGCATTGCTCAGATCgtatccttttgattgtacattgctcattattttcttttatatggcatatctgtccaagaatcatttgcatacaacaattgcatgtgtttgaggttgttaa...

Basic information

species Zea mays
transcript GRMZM2G081848_T05
intron # 5
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081848_T05 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g07310.1 (Oryza sativa), 5'ss of exon 5
TCTTGGTGTTGGTGTTGCAACTATAACTGATCTGCAACTCAACCTTGTGGGATCTGTATTGTCCCTACTGGCAATCATCACAACCTGCATTGCTCAGATCgtatccttttgattgtacattgctcattattttcttttatatggcatatctgtccaagaatcatttgcatacaacaattgcatgt-----gtttgaggttgttaa
| |||||||||| ||||||||| | ||||| ||||| || ||   ||||||||||||  ||||  | || |||||||| ||||||||||||||||| |||||||||||||||  | |  |      ||  ||| |   |  |   || | || | || ||||   |||| |  || ||   | |      ||       | ||  
TTTTGGTGTTGGAGTTGCAACTGTGACTGACCTGCAGCTTAATGCTGTGGGATCTGTCCTGTCTTTGCTCGCAATCATTACAACCTGCATTGCTCAAATCgtatccttttgacagcaagtgatattttcgtttatgaaacgttatatgtttgccaaataatc---tgcacatcaccatctaaagaaaacagtccacatgtatt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148960883|gb|EE011564.2|EE011564
EST:     GATCTGTATTGTCCCTACTGGCAATCATCACAACCTGCATTGCTCAGATC                         ATGACNAATACAATAC
genomic: GATCTGTATTGTCCCTACTGGCAATCATCACAACCTGCATTGCTCAGATCgtatcctttt ... aagccatcagATGACAAATACAATAC
EST: gi|31358400|gb|CD442757.1|CD442757
EST:     GATCTGTATTGTCCCTACTGGCAATCATCACAACCTGCATTGCTCAGATC                         ATGACAAATACAATACAGAAGAAGTTCAAGGTATCTTCGACACAGCTCCTG
genomic: GATCTGTATTGTCCCTACTGGCAATCATCACAACCTGCATTGCTCAGATCgtatcctttt ... aagccatcagATGACAAATACAATACAGAAGAAGTTCAAGGTATCTTCGACACAGCTCCTG
EST: gi|148995261|gb|EE034502.2|EE034502
EST:     GATCTGTATTGTCCCTACTGGCAATCATCACAACCTGCATTGCTCAGATC                         ATGACAAAATACA-TACAGAAGAGGTTCAAGGTATCTTCGACACAGCTCCT
genomic: GATCTGTATTGTCCCTACTGGCAATCATCACAACCTGCATTGCTCAGATCgtatcctttt ... aagccatcagATGACAAA-TACAATACAGAAGAAGTTCAAGGTATCTTCGACACAGCTCCT