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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTTTCCACTATAGGCCTTTGGGGGCGATCAATGGGTGCCGTTACATGgtaattggtagttttggataaagtttgtgctcttcttatttggtgcaagatttctctgtttcatttcatgcgattcattatcttaaggagcagtttgcaa...

Basic information

species Zea mays
transcript GRMZM2G081642_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081642_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g10440.1 (Oryza sativa), 5'ss of exon 5
AAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTTTCCACTATAGGCCTTTGGGGGCGATCAATGGGTGCCGTTACATGgtaattggtagttttggataaagtttgtgctcttcttatttggtgc--aagatttctctgtttcatttcatgcgattcattatcttaaggagcagtttgcaa
||||| ||||| ||||||| ||||||||  || |||  || ||| |||||||||  ||||||||||||||||||||| |||||||| |||||| ||||  |  |||||| ||||| | |   ||||| | ||| ||||||    |||||| | | ||||| |||| | || |   | |  || |   ||     || 
AAAGAGGACCTAAAATGTGTGGTGTCATACCTACGGACCACTAAGCAAGTTTCCTGTATAGGCCTTTGGGGGCGATCGATGGGTGCTGTTACAAGgtaccttttagttt-ggatatactgcatgctccttttacttggtggtggagatttatttatttcacttcacgtgacttgat-tgatatgttacaccaaacag

upper sequence: GRMZM2G081642_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA09G02050.1 (Glycine max), 5'ss of exon 6
AAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTTTCCACTATAGGCCTTTGGGGGCGATCAATGGGTGCCGTTACATGgtaattggtagttttggataaagtttgtgctcttcttatttggtgcaagatttctctgtttcatttcatgcgattcattatcttaaggagc----agtttgcaa-
||||| || |||||    | |||||||  | |  |   ||| |||||||| ||   |||||| |||||||| |||||||||||||| |||||| |||   |      ||   |  |  ||  |  ||      ||| ||   |  | | ||| | |  ||  ||   |    |||  |  |||||     ||||||    
AAAGATGATCTCAAGATGGTGGTGTCACATTTAAGAAGCAACAAACAAGTATCTCGTATAGGACTTTGGGGACGATCAATGGGTGCTGTTACAAGgt---ttacttcttccaaccagtttgattttcaatggttttagtaataattctttctatatacttctatt--acatgttaattctaggagttataagtttggttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21481543|gb|BQ578226.1|BQ578226
EST:     CAAGTTTCCACTATAGGCCTTTGGGGGCGATCAATGGGTGCCGNTACATG                         CCTACTCTATGGAGCAGAGGACCCTTCTATTG
genomic: CAAGTTTCCACTATAGGCCTTTGGGGGCGATCAATGGGTGCCGTTACATGgtaattggta ... gtaaatacagCCTACTCTATGGAGCAGAGGACCCTTCTATTG
EST: gi|148941968|gb|EC886955.2|EC886955
EST:     CAAGTTTCCACTATAGGGCTTTGGGGGCGATCAATGGGTGCCGTTACATG                         CCTACTCTATGGAGCAGAGGACCCTTCTA
genomic: CAAGTTTCCACTATAGGCCTTTGGGGGCGATCAATGGGTGCCGTTACATGgtaattggta ... gtaaatacagCCTACTCTATGGAGCAGAGGACCCTTCTA
EST: gi|149069709|gb|EE158095.2|EE158095
EST:     CAAGTTTCCACTATAGGCCTTTGGGGGCGATCAATGGGTGCCGTTACATG                         CCTACTCTATGGAGCAGAGGACCCTTCTATTGGTGGCATGATATTGGGATA
genomic: CAAGTTTCCACTATAGGCCTTTGGGGGCGATCAATGGGTGCCGTTACATGgtaattggta ... gtaaatacagCCTACTCTATGGAGCAGAGGACCCTTCTATTGGTGGCATGATATTGG-ATA
EST: gi|213187018|gb|FM194143.1|FM194143
EST:     CAAGTTTCCACTANNNGCCTTTGGGGGCGATCAATGGGTGCCGTTACATG                         CCTACTCTATGGAGCAGAGGACCCTTCTATTGGTGGCATGANNNNGGATAG
genomic: CAAGTTTCCACTATAGGCCTTTGGGGGCGATCAATGGGTGCCGTTACATGgtaattggta ... gtaaatacagCCTACTCTATGGAGCAGAGGACCCTTCTATTGGTGGCATGATATTGGATAG