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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTAACTACTGCTGCATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCAATGTTGTAAAGgtttgctctcaccagcaccagtattttcaaattggacttcattttaacagcattggtaaagaacatcctttctgtttcatgcaacatgcag

Basic information

species Zea mays
transcript GRMZM2G081188_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081188_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g66350.1 (Oryza sativa), 5'ss of exon 5
TAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTAACTACTGCTGCATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCAATGTTGTAAAGgtttgctctcaccagcaccagta---ttttcaaattggacttca---------------ttttaacagcattggtaaagaacatcctttctgtttcatgcaacatgcag-
||||||||| ||| |||| || |||||||| || || ||| | ||||| || || ||||| ||||||||||| |||||||||||||| |||||||||||||| ||  |||||||||    | |       || ||||||||| |               ||  || || |||| | |||| | | |||||| | |   ||||  | |   
TAGTGATCTATTGCTGGAGATTGGAGCTGGAATTGAGTTAGCAACTGCAGCCTTTCCTCAATTTTTCTTGCCCATGGCTTGCGTAGCAAATGTTGTAAAGgtctgtcctcaccagctgttgcaaaccacacatattggacttaaaatatatctatctgtttcaaaaagtattgatgaagagcgttctttctttct---gcaatgttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32837137|gb|CD976815.1|CD976815
EST:     CATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCAATGTTGTAAAG                         AATGTCGCTGCTGTTACGTCAACTTCAACTCGCACTCCAATCTATAAGGCC
genomic: CATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCAATGTTGTAAAGgtttgctctc ... caacatgcagAACGTCGCTGCTGTTACATCAACTTCAACTCGCACTCCAATCTATAAGGCC
EST: gi|211302733|gb|FL372536.1|FL372536
EST:     CATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCAATGTTGTAAAG                         AACGTCGCTGCTGTTACATCAACTTCAACTCGCACTCCAATCTATAAGGCC
genomic: CATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCAATGTTGTAAAGgtttgctctc ... caacatgcagAACGTCGCTGCTGTTACATCAACTTCAACTCGCACTCCAATCTATAAGGCC
EST: gi|211421799|gb|FL427212.1|FL427212
EST:     CATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCAATGTTGTAAAG                         AACGTCGCTGCTGTTACATCAACTTCAACTCGCACTCCAATCTATAAGGCC
genomic: CATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCAATGTTGTAAAGgtttgctctc ... caacatgcagAACGTCGCTGCTGTTACATCAACTTCAACTCGCACTCCAATCTATAAGGCC
EST: gi|32853437|gb|CD993118.1|CD993118
EST:     CATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCAATGTTGTAAAG                         AATGTCGCTGCTGTTACGTCAACTTCAACTCGCA
genomic: CATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCAATGTTGTAAAGgtttgctctc ... caacatgcagAACGTCGCTGCTGTTACATCAACTTCAACTCGCA
EST: gi|31353527|gb|CD437884.1|CD437884
EST:     CATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCAATGTTGTAAAG                         AATGTCGCTGCTGTTACGTCAACTTCAACTCGCACTCCAATCTATAAGGCC
genomic: CATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCAATGTTGTAAAGgtttgctctc ... caacatgcagAACGTCGCTGCTGTTACATCAACTTCAACTCGCACTCCAATCTATAAGGCC
EST: gi|148958478|gb|EC904716.2|EC904716
EST:     ATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCCATGTTGTAAAAG                         A-CGTCGCTGCTGTTACA
genomic: ATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCAATGTTGTAAA-Ggtttgctctc ... caacatgcagAACGTCGCTGCTGTTACA
EST: gi|148966241|gb|EE017202.2|EE017202
EST:     CATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCAATGTTGTAAAG                         AACGTCGCTGCTGGTACATCAACTTC
genomic: CATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCAATGTTGTAAAGgtttgctctc ... caacatgcagAACGTCGCTGCTGTTACATCAACTTC