1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAGgtaagtatcttcatataatattatgtgttgttagatattccgtagtaacagcttgtgtctccaaagggtaagagaactggtttgggatgaattatcttag...
species | Zea mays |
transcript | GRMZM2G080722_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGNTAAAGCATACAG TAANNCTG-CCTACGTTTCCACAAATATTTATCAAAGGAGAGTTCGEST: gi|211393122|gb|FK956090.1|FK956090
genomic: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAGgtaagtatct ... atttctgcagTAA--CTGGCCTACGTTTCCACAAATATTTATCAAAGGAGAGTTCG
EST: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTAAAAGCATACAG TAACTGGCCTACGTTTTCACAAATATTTATCAAAAGAGAGTTCGGTGGGGGEST: gi|211393127|gb|FK956095.1|FK956095
genomic: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAGgtaagtatct ... atttctgcagTAACTGGCCTACGTTTCCACAAATATTTATCAAAGGAGAGTTCGTTGGGGG
EST: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAG TAACCTGGCCTACGTTTTCCACAA-TATTTATCAAAGGAGAGTTCGGTTGGEST: gi|116818678|gb|EC861726.1|EC861726
genomic: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAGgtaagtatct ... atttctgcagTAAC-TGGCCTACGTTT-CCACAAATATTTATCAAAGGAGAGTTCG-TTGG
EST: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAG TAACTGGCCTACGTTTCCACAAATATTTATCAAAGGACAGTTCGA-GGGGGEST: gi|211395747|gb|FK956104.1|FK956104
genomic: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAGgtaagtatct ... atttctgcagTAACTGGCCTACGTTTCCACAAATATTTATCAAAGGAGAGTTCGTTGGGGG
EST: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAG TAACTGGCCTACGTTTCCACAAATATTTATCAAAGGAGAGTTCGTTGGGGGEST: gi|6020541|gb|AW065469.1|AW065469
genomic: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAGgtaagtatct ... atttctgcagTAACTGGCCTACGTTTCCACAAATATTTATCAAAGGAGAGTTCGTTGGGGG
EST: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGGGTTAAAGCATACAG TAACTGGCCTACGTTTCCACAAATATTTATCAAAGGAGAGTTCGTTGGGGGEST: gi|32908664|gb|CF013477.1|CF013477
genomic: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAGgtaagtatct ... atttctgcagTAACTGGCCTACGTTTCCACAAATATTTATCAAAGGAGAGTTCGTTGGGGG
EST: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAG TAACTGGCCTACGTTTCCACAAATATTTATCAAAGGAGAGTTCGTTGGGGGEST: gi|149051827|gb|EE155954.2|EE155954
genomic: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAGgtaagtatct ... atttctgcagTAACTGGCCTACGTTTCCACAAATATTTATCAAAGGAGAGTTCGTTGGGGG
EST: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAG TAACTGGCCTACGTTTCCACAAATATTTATCAAAGGAGAGTTCGTTGGGGG
genomic: AGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAGgtaagtatct ... atttctgcagTAACTGGCCTACGTTTCCACAAATATTTATCAAAGGAGAGTTCGTTGGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAGgtaagtatcttcatataatattatgtgttgttagatattccgtagtaacagcttgtgtctccaaagggtaagagaactggtttgggatgaattatcttag
- - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagagaac